|
Name : Spro_4251 (Spro_4251) Accession : YP_001480473.1 Strain : Serratia proteamaculans 568 Genome accession: NC_009832 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 4712998 - 4714980 bp Length : 1983 bp Strand : - Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: kpn:KPN_00160 pullulanase D protein DNA sequence : ATGTACAACCTCGACTTATTTCCAGGCAGACATTGGTACATGCACGCAAAAATGACAAATATGCTCTTCTCGAAAATGAT CGCATTAATGGCAGTGCTCGTCATGCTGCTGTGGGTGAGCGCGCCCGTTCAGGCCGAGGCGTTTTCCGCCAATTTTAAAG GAACGGACATACACGAATTTATCAGTACAGCCAGTAAGGCGCTGGGGAAAACCATCATTATTGACGATGCGGTAAAAGGC AAGGTTACCGTGCGCAGTTATGAGCCGCTGGATGCCGGGCAATATTACCAATTTTTCCTCAACGTGCTTGATGTCTATGG TTATGCGGTGATCAGCATGCCCAACAACGTTCTGAAGGTGATCCCGGCGAAAGACGGCAAAAGGGCGGCGCTCAACGCCC TGAATACCCCAGCCGAAGGCGATGAGCTGATCATGCGGATTGTGCCCCTGAACAATATCGCGGCGAAAGAGGTGGCGCCG TTGATGCGCCAGTTTAACGACAGCATTGGTATCGGGAACGTGGTGTTCCTGGAAAGTGGCAATGCGTTGTTGATCACCGG CCGTGCCGATGTAGTCAATAGTCTGGTTGAGCTGGCCCATGAAATGGATCGTACCGAACAGGCCGGAGTGGTCTCTGTCG CCTTGCAACATGCCTCCGCCACCGATGTGGTCAGCATTGTCACCACGTTATTTCGGGATGAAAACCGCACGAAAAAGGGC GCGCTTCCCGGCATGAAAGTGGTTGCCGATGAACGGACCAACACCGTGCTGATTGCCGGCGAACCGAGCCTGCAGGCGCG CATCGAAGGGATTATCCAGCAGTTGGATCAAGAAAAAGCCAGCCAGGGGAATACCAAGGTGATCCGGCTGAAATATGCCA AAGCGCAAGGCCTGCTTGAAGTGTTGTCCGGCGTCAGCGCCAATCTGCAAGACGAGAAAAAAACGGTCGGCAACAACGTT TCCGTCATGAAGAACATGGTGATCAAGGCAGATGAACAGACCAATGCGCTGATCATCAACGCCACACCGGACGTGATGAG CAACCTGGAAAAAGTCATTGAGCAGCTTGATATTCGCCGGGCTCAGGTACTGGTTGAAGCGGTGATTGTCGAAATGCAAA ACGCAGACGGTCTGAACCTGGGTATCCAATGGGCCAACCGTTACGGTGGCGGTACGCAGTTCGGCAATGCTCAGGCGCAG ATCGCTCCCGGCTTTAAAGGGGGAATGACGGAGGTGTTTAAAAACGCCAACGGTCTGGTCACGGGATTTTACAGCGGTAA CTGGGCCGGCTTGCTCACCGCCATCAGTAACCAGAGCCAGAACAATATTCTCGCCACGCCGAGCATCATGACGTTGGACA ACGAAGATGCCGAGTTTAGCGTGGGTCAGGATGTGCCAATTCTGACCGGCTCGCAAACCACCAACAGTGACAACGTGTTT AATACGGTGGCGCGCAAAACCGTCGGCATCAAGCTCAAGGTCAAGCCGCAAATCAACAAAGGGCAGTCGGTACTGCTGCA GATCGAACAGGAAGTTTCCAGCGTGGCGGAAAACAGCTCGGTGGATAAGGATAACCTGGGCGCGACTTTCAATATCCGGA CGGTGAATAACACGGTGCTGGTTGAAAGTGGTGAGACCGTGGTGGTCGGCGGTTTGCTGGACAAGTCGCAATCTGACAGC AAAAGTGCGGTGCCGTTTTTGGAACGCATACCGCTGCTTGGCGCTTTGTTCCGCTCTACTTCTCATAAAGAGAGCAAACG GAATCTTATCTTGTTTATTCGCCCGACGGTCATACGCTCGACCGAGGAATACGCGCAAGAGAGTATGCGCAAAGCGGCCC GCTTCCGATCACTCGACGCTCAGCCTCTCCCGTTAAAAACCCATGCGGAGGCGCAGCTCGATAGGGTCGGTTCCACTGAG AATGGCACTTTCCAGCGGATCCAACGGCAAATTGATGCATTTTACCCGCGGGGGGAGCTGTGA Protein sequence : MYNLDLFPGRHWYMHAKMTNMLFSKMIALMAVLVMLLWVSAPVQAEAFSANFKGTDIHEFISTASKALGKTIIIDDAVKG KVTVRSYEPLDAGQYYQFFLNVLDVYGYAVISMPNNVLKVIPAKDGKRAALNALNTPAEGDELIMRIVPLNNIAAKEVAP LMRQFNDSIGIGNVVFLESGNALLITGRADVVNSLVELAHEMDRTEQAGVVSVALQHASATDVVSIVTTLFRDENRTKKG ALPGMKVVADERTNTVLIAGEPSLQARIEGIIQQLDQEKASQGNTKVIRLKYAKAQGLLEVLSGVSANLQDEKKTVGNNV SVMKNMVIKADEQTNALIINATPDVMSNLEKVIEQLDIRRAQVLVEAVIVEMQNADGLNLGIQWANRYGGGTQFGNAQAQ IAPGFKGGMTEVFKNANGLVTGFYSGNWAGLLTAISNQSQNNILATPSIMTLDNEDAEFSVGQDVPILTGSQTTNSDNVF NTVARKTVGIKLKVKPQINKGQSVLLQIEQEVSSVAENSSVDKDNLGATFNIRTVNNTVLVESGETVVVGGLLDKSQSDS KSAVPFLERIPLLGALFRSTSHKESKRNLILFIRPTVIRSTEEYAQESMRKAARFRSLDAQPLPLKTHAEAQLDRVGSTE NGTFQRIQRQIDAFYPRGEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-103 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Spro_4251 | YP_001480473.1 | general secretion pathway protein D | VFG2047 | Protein | 6e-101 | 41 |
