Gene Information

Name : Spro_4145 (Spro_4145)
Accession : YP_001480367.1
Strain : Serratia proteamaculans 568
Genome accession: NC_009832
Putative virulence/resistance : Virulence
Product : pili assembly chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 4597920 - 4598675 bp
Length : 756 bp
Strand : -
Note : PFAM: pili assembly chaperone; KEGG: yen:YE0782 pili chaperone protein

DNA sequence : 
ATGAAAATGAACAAGATTTTGCCCCTTTCCGCGTTGTTGTTGTGCACGGGAATGACGGCTCAACAGGCAAACGCTGCGAT
TTCGCTGGACCGCACCCGGATCGTATTTAACGGCGGGGAAAAATCACAGAGTCTGACGGTGAGTAACCAGAACAAACAGT
TGCCCTATTTGGCTCAGGGTTGGATTGAAGATACCCAAGGCAATAAAATCCAGACCCCGCTGACTATTTTGCCGCCGGTA
CAACGCATTGAACCGGGCGCACAGAGCCAGATTAAAATTCAGGCTCTGCCGGGTGCCAATTTGTTGGCGCAAGACCGGGA
ATCGCTGTTTTATTTCAACCTGCGGGAAATTCCTCCGAAGAGCGATAAACCCAATACTTTGCAAATAGCCTTGCAAACGC
GCATCAAGCTTTTTTACCGGCCGGCGTCGATTGTGCCGACCAAAACGCAGATGGCTGCCCCATGGCAGGAAAAGCTGACG
CTGACACGTCAGGGCGACAGCTATCAACTGAACAACCCGACGCCGTACTTTATCACGTTGGTGGATGCGGGCAGCAAACC
GAATGCTGAAGGTGTTAAGGGCTTTGAACCGGTGATGGTACCGCCGAAAGGCCAAGCGCCGTTGGGGGTGAATGCCGGTG
TGTTGGGTGCCAATCCAGTTCTGACCTACATCAACGACTACGGTGGTCGTCCACAGCTGAAATTCACCTGCAGCGGCACT
ACCTGTAGCGCCACGCCGGTCAAAGATAGCAAATAA

Protein sequence : 
MKMNKILPLSALLLCTGMTAQQANAAISLDRTRIVFNGGEKSQSLTVSNQNKQLPYLAQGWIEDTQGNKIQTPLTILPPV
QRIEPGAQSQIKIQALPGANLLAQDRESLFYFNLREIPPKSDKPNTLQIALQTRIKLFYRPASIVPTKTQMAAPWQEKLT
LTRQGDSYQLNNPTPYFITLVDAGSKPNAEGVKGFEPVMVPPKGQAPLGVNAGVLGANPVLTYINDYGGRPQLKFTCSGT
TCSATPVKDSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 3e-58 53
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 4e-58 53
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 6e-58 53
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 2e-58 52
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 8e-58 52
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 8e-58 52
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 6e-58 52
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 2e-50 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_4145 YP_001480367.1 pili assembly chaperone VFG1547 Protein 2e-58 53
Spro_4145 YP_001480367.1 pili assembly chaperone VFG0896 Protein 3e-58 52
Spro_4145 YP_001480367.1 pili assembly chaperone VFG0885 Protein 9e-51 50