Gene Information

Name : Spro_0387 (Spro_0387)
Accession : YP_001476623.1
Strain : Serratia proteamaculans 568
Genome accession: NC_009832
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 434715 - 435566 bp
Length : 852 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: psa:PST_1859 transposase, IS3 family

DNA sequence :
ATGTCGCCATTTTACCCTGTACGCCGCCTATGCCTGGTTCTTGGCCTTCATTACAGCGGCTATTACCAGTGGCTAAAGCA
GCCAGAATCGTTGCGCGCCCGACAGGACGAACGTCAGACTGGCCTCATTAAGCAACTGTGGCTTGAAAGTGGTACGGTTT
ATGGTTACCGGAAAATCTGGCTCGATATGAAAGACCTGGGTGAACGCGCCGGACGTAACAGGGTTGCGCGGTTAATGAGG
CTCGCTGAATTAGCATCCCAGACCGGATATCGAAAACGACGTTACTACGGTGGTGGAAAACCTTCGGTAGCCAGCCCTAA
TTACCTTGAGCGACAGTTCATTGTCCCAACTCCAAATACGCATTGGGTGAGTGACATGACCTATATAAGGACGCATGAAG
GCTGGTTATATCTGGCTGTTGTTCTCGATCTCTTCTCACGTCGGGTTATAGGCTGGAGCATGGGAGGACGAATGACTGCT
GAGTTAGTGATGGATGCATTATTGATGGCGGTATGGCGACGTAAACCAACAGCAGAAGTATTAATCCATTCAGATCAGGG
TTCTCAATATACCAGCGAAAGGTGCCAGCATTTTATGGCATCTCACAATTTGAAAAGCAGCATGAGTCGTCGGGGTAATT
GCCATGACAACGCAGTGGCAGAAAGCTTTTTCCAGTTGCTAAAACGGGAACGCATAAAGAAACGGATCTATAAAAACAGA
GAAGACGCGAAGGCGGATATCTTCGATTATGTAGAGATGTTTTATAATGCTAAACGCCGCCACAGTGCCTGTGAGGATCA
ACCCCCTGCAGTTTATGAAAGTGCCTGGTTCATGAGGCACGGAACCGTCTAG

Protein sequence :
MSPFYPVRRLCLVLGLHYSGYYQWLKQPESLRARQDERQTGLIKQLWLESGTVYGYRKIWLDMKDLGERAGRNRVARLMR
LAELASQTGYRKRRYYGGGKPSVASPNYLERQFIVPTPNTHWVSDMTYIRTHEGWLYLAVVLDLFSRRVIGWSMGGRMTA
ELVMDALLMAVWRRKPTAEVLIHSDQGSQYTSERCQHFMASHNLKSSMSRRGNCHDNAVAESFFQLLKRERIKKRIYKNR
EDAKADIFDYVEMFYNAKRRHSACEDQPPAVYESAWFMRHGTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-38 44
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-38 44
Z5089 NP_290241.1 transposase Not tested LEE Protein 9e-30 42
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 7e-30 42
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 2e-30 41
unnamed CAI43898.1 putative transposase Not tested LEE Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_0387 YP_001476623.1 Integrase catalytic subunit VFG0785 Protein 4e-30 42