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Name : lysS (Spro_3888) Accession : YP_001480112.1 Strain : Serratia proteamaculans 568 Genome accession: NC_009832 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 4307579 - 4309096 bp Length : 1518 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAGCAACAACCACAAGGCGCCGAACAGGCGCTGGATCTCAATAACGAGTTGCAGTCACGCCGTGAAAAACTGGC TGCGCTGCGCGAGAACGGCATTGCGTTCCCGAATGATTTCCGTCGCGACACCACGTCCGACAAGCTGCACGCTGCGTACG GCGATAAAGACAACGAAGAGCTGGAAGCACTGGGTGTAGAAGTCACCGTTGCCGGCCGTATGATGACCCGTCGTATCATG GGCAAGGCATCCTTTGTCACGCTGCAAGACGTTGGTGGCCGCATCCAGTTGTACGTCGCCCGCGACGATCTGGCGGAAGG CGTTTACAACGAAGAATTCAAGAAGTGGGACCTGGGTGACATCCTTGGCGCACGCGGTAAGCTGTTCAAAACCAAGACCG GCGAGCTGTCTATCCACTGCACCGAACTGCGCCTGCTGACCAAGGCCCTGCGCCCGCTGCCGGACAAGTTCCACGGCCTG GCCGATCAGGAAACCCGCTATCGTCAGCGTTACCTGGATCTGATTGCCAACGACGAATCGCGCAAGACCTTCCAGGTGCG TTCTCAGATCATGGCGGCGATGCGTAACTTCATGGTGGAACGCGGCTTCATGGAAGTCGAAACCCCTATGATGCAGGTGA TCCCGGGTGGTGCTTCTGCTCGTCCATTCGTGACTCACCACAATGCGCTGGACATCGATATGTATCTGCGTATTGCCCCA GAGCTGTACCTGAAGCGTCTGGTGGTAGGTGGCTTCGAGCGCGTGTTCGAAATCAACCGTAACTTCCGTAACGAAGGCGT TTCTCCGCGTCATAACCCAGAGTTCACCATGATGGAACTCTATATGGCTTACGCGGATTACAAAGATCTGATCGAACTGA CCGAGTCGCTGTTCCGCACCCTGACCCAGAACGTGCTGGGTAATACTCAGGTGCAGTACGGTGATGAAGTGTTCGACTTC GGCAAGCCGTTCGTGAAGCTGACCATGACCGAGGCGATCAAAAAATACCGTCCGGAAACCGATCTGGCTGACCTGGCTGA TATGGGTAAAGCGGTGGCTATCGCTGAATCCATCGGCATCAAGGTTGAGAAGAGCTGGGGTCTGGGCCGCGTAGTGACCG AGATCTTCGAAGAAGTGGCGGAAAGCCATCTGATTCAGCCGACTTTCATCACTGAATACCCGGCCGAAGTTTCACCGCTG GCGCGCCGTAACGACGTTAACCCGGAAATCACTGACCGCTTTGAGTTCTTCATCGGCGGCCGTGAAATCGGCAACGGCTT CTCCGAGCTGAATGACGCAGAAGACCAGGCGCAGCGTTTTGCTGACCAGGCTAATGCGAAAGACGCAGGTGATGACGAAG CCATGTTCTACGACGAAGACTACGTCACCGCGCTGGAGCACGGCCTGCCACCAACCGCAGGTCTGGGCATCGGTATCGAC CGTATGGTGATGCTGTTCACTAACAGCCACACCATTCGCGACGTGATTCTGTTCCCGGCAATGCGCCCACAGAAATAA Protein sequence : MSEQQPQGAEQALDLNNELQSRREKLAALRENGIAFPNDFRRDTTSDKLHAAYGDKDNEELEALGVEVTVAGRMMTRRIM GKASFVTLQDVGGRIQLYVARDDLAEGVYNEEFKKWDLGDILGARGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL ADQETRYRQRYLDLIANDESRKTFQVRSQIMAAMRNFMVERGFMEVETPMMQVIPGGASARPFVTHHNALDIDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMELYMAYADYKDLIELTESLFRTLTQNVLGNTQVQYGDEVFDF GKPFVKLTMTEAIKKYRPETDLADLADMGKAVAIAESIGIKVEKSWGLGRVVTEIFEEVAESHLIQPTFITEYPAEVSPL ARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFADQANAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID RMVMLFTNSHTIRDVILFPAMRPQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 9e-170 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001480112.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 5e-170 | 69 |
