Gene Information

Name : Spro_3887 (Spro_3887)
Accession : YP_001480111.1
Strain : Serratia proteamaculans 568
Genome accession: NC_009832
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 4305958 - 4307172 bp
Length : 1215 bp
Strand : -
Note : PFAM: integrase family protein; KEGG: ypn:YPN_3086 integrase

DNA sequence : 
ATGCCCCTCACAGACCTTGAGCTACGGCGCTCTAAACCGCAAGACAAGCCCTATACACTCAGTGATGGCGGTGGGCTTTC
TATACTCATTGAGCCGAACGGTTCCAAAGGCTGGCGCTTTCGCTACCGCTTCGACGGTAAACCAAAAATGCTTTCCCTCG
GCACATACCCCACAGTTTCACTAACCGACGCAAGGCAAAAGCGCGATGAGGCTAAAAAGCTGGTGGTGTCAGGTATCAAT
CCCAGCGAAGCCAGGAAGCAGCAGAAACGAGATCGGCAAGATGTTACTGGCAATACCTTTGAGGGGATAGCGCGGGAATG
GTACGAAAAGCGGCGCGATCGCTGGTCAGAGTCATACGCAGAAGAGATGATGAAAACGTTTGAGAGCGATGTTTTCCCAT
ACATCGGCAATCGGCCAATTGCCGAGATAAAGCCAATGGAGCTTATGGGGACGCTTTCTAAACTGGATGAACGCGGCGCA
ACAGAGAAATTGCGCAAGGTGCGCCAGCGATGCGGGGAGGTATGGAAATACGCCATCGTTACTGGCCGGGCTGAATATAA
CCCAGCCCCGGATCTCGCCAGTGCGTTCTCACCGCATAAAAAAGAGCACTATGCGTTCTTGTCAGTTGCCGAGCTGCCCG
AGTTTTTCCGCATCTTTAACACATATACCGGCAGCCTGATCGTTAAGCTGGCTATGCGCTTGCTTATTATCACAGGGACA
AGGCCGGGAGAGCTGCGCAAGGCTGAATGGTCGGAGTTTGATTTTGATAACCGGCTTTGGGAAGTACCGCCTGAACGCAT
GAAGAAACGTCGCCCTCATTGCGTGCCACTATCTGATCAGGCTATCAGCATTCTGGAACAGCTAAAACCGCTGACCGGTC
ATTACAGCTTTGTGTTTCCGGGCAGGATCCACCACAGCAAGCCAATAAGCGAAATGGCTATGAATGTGCTGGTTCGCCGT
ATTGGTTATGCCGGGCGTGTAACGGGGCACGGATTCCGGCATACCATGAGTACCATCCTGCATGAACAAGGCTATAACAC
TGCGTGGATTGAAACCCAGTTGGCCCACGTTGATAAGAATAGTATTCGTGGAACCTATAACCATGCCCAATACCTTGATG
GACGCCGGGAGATGCTTCAGTGGTATGCCGACTATATGGACAGCCTGGAGCTGGGAGGCAATGTGGTTCACGGCTCGTTC
GGAAAGCAGGCATAA

Protein sequence : 
MPLTDLELRRSKPQDKPYTLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTVSLTDARQKRDEAKKLVVSGIN
PSEARKQQKRDRQDVTGNTFEGIAREWYEKRRDRWSESYAEEMMKTFESDVFPYIGNRPIAEIKPMELMGTLSKLDERGA
TEKLRKVRQRCGEVWKYAIVTGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPEFFRIFNTYTGSLIVKLAMRLLIITGT
RPGELRKAEWSEFDFDNRLWEVPPERMKKRRPHCVPLSDQAISILEQLKPLTGHYSFVFPGRIHHSKPISEMAMNVLVRR
IGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYMDSLELGGNVVHGSF
GKQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 8e-125 62
aec33 AAW51716.1 Int Not tested AGI-3 Protein 6e-125 62
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 6e-118 61
int AAC31482.1 CP4-like integrase Not tested LEE Protein 7e-124 61
int ACU09430.1 integrase Not tested LEE Protein 7e-124 61
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 9e-124 61
ECs4534 NP_312561.1 integrase Not tested LEE Protein 9e-124 61
int AAD44730.1 Int Not tested SHI-2 Protein 3e-123 61
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-122 61
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-122 61
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-122 61
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-111 53
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-70 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-70 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-71 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 8e-71 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 8e-71 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-71 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-71 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-73 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-73 41
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 2e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_3887 YP_001480111.1 integrase family protein VFG0783 Protein 4e-124 61
Spro_3887 YP_001480111.1 integrase family protein VFG0598 Protein 8e-123 61
Spro_3887 YP_001480111.1 integrase family protein VFG1693 Protein 1e-71 41