Gene Information

Name : Spro_0356 (Spro_0356)
Accession : YP_001476594.1
Strain : Serratia proteamaculans 568
Genome accession: NC_009832
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 407515 - 408558 bp
Length : 1044 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_7234 integrase, catalytic region

DNA sequence :
ATGGCAGCTTTGGATCTGCCTATGTTGACATTGGAGTTACGTGTGGAGATTGCAGTTCTTTTACGTCAGGGCATGTCGAT
TCGGGGTATTGCCCGGCAGCTTTCTTGTTCCCGGCAGACCGTCCGCCGTTATATTCGGATGCAGGACTCACCTGCTAAAG
CCCGTTATTCCGAACGCCTTCCCCGACCCGGGAAGCTGGACCCGTTTAAGCCCTATATTCTTGAACGTGTTGACGCTGCC
AGACCCCATTGGATACCGGCCAGCGTTATGCTGAGTGAGATCCAACTTCGCGGGTACTGCGGTGGATACAGCATGTTGAC
GGCTTTCTTGCTTCCGCTTAAGCAACAGCCGAACGATCCCGTCGTGCGTTTTGAGACGCAGCCCGGTGAGCAGATGCAGG
TCGATTTTACGGTGATAAGACAGGGCCGGAACCCGTTGCTGGCATTTGTCGCCACGCTGGGCTGGAGTCGGGCAACCTTT
GTGCGTTTTTATCCCCGCCAGGATACGGCAGCATGGTGTGACGGTATTGAACAGGCGCTTTTGGCCTTTGGTGGAACACC
GAGACATCTCCTGTTTGATAATGCCAAGACCATTATTCTTGAACGTGACGTTTATGGCGATGGCCGTCACCGGTGGAACC
CGCCATTACTGGCTCTCGCCGAGAAGTACGGTTTTACGCCCCGGGTGTGCAGGCCTTATCGCGCAAAGACCAAGGGTAAA
GTTGAGCGATTCAACCGTTATCTGAAACATAGCTTTGTCGTCCCTCTGGCCACCACGTTTAAACAGGCCGGGCTGCTACT
TGATGTCGACTCAGCCAACAGTCGCGTTGGGCCATGGCTTATCACCGTGGCCAACGCCCGTAAGCATGGCACGACCGGTG
TTCCGCCAGAACACCGGCTGCAACAGGAGTTAGCTGCGCTGCTTCCTCTTCCTCGAGTAGCAAGGACAGTACCCGTCGTC
GCGGATAATCAAAGGGTTATACCAAGAGAGAGTTTCCAACATCCATTGTCTGTCTATCAGTCGCTGCTGGAGGCGGGATT
ATGA

Protein sequence :
MAALDLPMLTLELRVEIAVLLRQGMSIRGIARQLSCSRQTVRRYIRMQDSPAKARYSERLPRPGKLDPFKPYILERVDAA
RPHWIPASVMLSEIQLRGYCGGYSMLTAFLLPLKQQPNDPVVRFETQPGEQMQVDFTVIRQGRNPLLAFVATLGWSRATF
VRFYPRQDTAAWCDGIEQALLAFGGTPRHLLFDNAKTIILERDVYGDGRHRWNPPLLALAEKYGFTPRVCRPYRAKTKGK
VERFNRYLKHSFVVPLATTFKQAGLLLDVDSANSRVGPWLITVANARKHGTTGVPPEHRLQQELAALLPLPRVARTVPVV
ADNQRVIPRESFQHPLSVYQSLLEAGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 9e-56 46
api83 CAF28557.1 transposase Not tested YAPI Protein 2e-56 44
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 3e-56 44
unnamed CAA21403.1 - Not tested HPI Protein 3e-56 44
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 2e-56 44
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 2e-56 44
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 2e-56 44
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-56 44
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 3e-56 44
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 2e-56 44
y2411 NP_669718.1 transposase Not tested HPI Protein 3e-56 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_0356 YP_001476594.1 Integrase catalytic subunit VFG1461 Protein 5e-56 46
Spro_0356 YP_001476594.1 Integrase catalytic subunit VFG1514 Protein 1e-56 44
Spro_0356 YP_001476594.1 Integrase catalytic subunit VFG1626 Protein 1e-56 44
Spro_0356 YP_001476594.1 Integrase catalytic subunit VFG1607 Protein 1e-56 44