Gene Information

Name : Spro_3482 (Spro_3482)
Accession : YP_001479708.1
Strain : Serratia proteamaculans 568
Genome accession: NC_009832
Putative virulence/resistance : Resistance
Product : AraC family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 3856396 - 3856818 bp
Length : 423 bp
Strand : +
Note : PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sgl:SG1549 putative right origin-binding protein

DNA sequence : 
ATGGCAATTAATATGAAGATTTTTATTAATGAGATGCTTAAATGGATAGAGGGCAATTTGGGAGCCGAGCTGAATATAAA
GACCATTGCAAAAAAATCCGGCTACAGCAGATTCCACATTCAACGGCTTTTCAAGTTGCATGCAGGGCTAACGCTTGCCC
AATATATCAGAATGCGGCGCGTCACTGAGGCGGCGATCGCACTGAGATTTACCGACAGAAAAATCATGGATATCGCACTG
GATTATGGCTTTGACTCTCAACAGGTTTTTACTCGGACATTCAAAAAACAGTTAAAAACCACGCCAGGCGAGCTGAGGAG
AAGCAAGCAATTAAACAATAACCGGCTCTGTTACTCATTGTACATGCCGACGATGGTGCAAAAACCCTCGACAATCCAGC
CTAACGCCCACAAACCTAACTAA

Protein sequence : 
MAINMKIFINEMLKWIEGNLGAELNIKTIAKKSGYSRFHIQRLFKLHAGLTLAQYIRMRRVTEAAIALRFTDRKIMDIAL
DYGFDSQQVFTRTFKKQLKTTPGELRRSKQLNNNRLCYSLYMPTMVQKPSTIQPNAHKPN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 2e-21 53
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 2e-21 53
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 4e-19 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_3482 YP_001479708.1 AraC family transcriptional regulator NC_010558.1.6276025. Protein 1e-21 53
Spro_3482 YP_001479708.1 AraC family transcriptional regulator CP000034.1.gene4505. Protein 1e-19 46
Spro_3482 YP_001479708.1 AraC family transcriptional regulator BAC0371 Protein 5e-20 46
Spro_3482 YP_001479708.1 AraC family transcriptional regulator NC_002695.1.914293.p Protein 5e-20 46
Spro_3482 YP_001479708.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 1e-18 46
Spro_3482 YP_001479708.1 AraC family transcriptional regulator CP001138.1.gene612.p Protein 1e-20 45
Spro_3482 YP_001479708.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 1e-19 45
Spro_3482 YP_001479708.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 2e-18 45
Spro_3482 YP_001479708.1 AraC family transcriptional regulator CP001918.1.gene2033. Protein 2e-18 42
Spro_3482 YP_001479708.1 AraC family transcriptional regulator CP000647.1.gene1624. Protein 4e-18 42
Spro_3482 YP_001479708.1 AraC family transcriptional regulator CP001138.1.gene1637. Protein 5e-18 42
Spro_3482 YP_001479708.1 AraC family transcriptional regulator NC_002695.1.917339.p Protein 3e-18 41
Spro_3482 YP_001479708.1 AraC family transcriptional regulator BAC0560 Protein 3e-18 41
Spro_3482 YP_001479708.1 AraC family transcriptional regulator CP000034.1.gene1596. Protein 2e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_3482 YP_001479708.1 AraC family transcriptional regulator VFG1038 Protein 9e-22 53
Spro_3482 YP_001479708.1 AraC family transcriptional regulator VFG0585 Protein 1e-19 45