Gene Information

Name : Spro_2131 (Spro_2131)
Accession : YP_001478360.1
Strain : Serratia proteamaculans 568
Genome accession: NC_009832
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2326662 - 2327522 bp
Length : 861 bp
Strand : -
Note : PFAM: transport system permease protein; ABC-3 protein; KEGG: ypi:YpsIP31758_1703 chelated iron ABC transporter, permease protein YfeC

DNA sequence : 
ATGCTGGAACTTCTGCTGCAACCCTTCAGTTACAACTACATGGTCAAGGCCATCTGGGTCAGCGCCATCGTCGGCGCCGC
CTGTGCTTTCCTGTCAGCTTACCTGATGCTGAAAGGCTGGTCGCTGATGGGCGACGCGTTGTCGCACTCGGTGGTGCCTG
GGGTCGCGGGTGCCTATGCGCTGGGCCTGCCCTACGCCGCGGGTGCCTTCTTTACCGGCATGCTGGCCGCGCTGGCCATG
ACGCTGGTGCGCCACGTCACTCGCCTGCGTGAAGACGCGATTATCGGCTTTATCTTTTCCACCTTCTTCGCCGTCGGCCT
GCTGATCGTTTCGCTTAACCCAACCTCGGTTAACGTGCAGTCGATTATCTTCGGCAATATTCTCGGCATCGCCGACGAAG
ACGTGTTGCAGGTCGAGATTATCATCGGCGTATCGCTGCTGATCCTGTGCCTGGTGTGGAAAGATCTGCTGGCGGTGTTC
TTTGACGAAAACCACGCGGTGTCGATCGGCCTGTCGCCGCTGCGGCTGAAGATCCTGTTCTTCACCCTGCTCAGCGCCTG
CACCGTGGCGGCATTACAAACCGTCGGTGCGATTTTGGTGATCGCCATGGTCATCACGCCGGGGGCAACCGCCTATCTGC
TGACCGACCGTTTCAGTCGGTTGGTGATCATTGCCATCGTGATCGGTGCATTAACCAGCAGCTTCGGGGCCTACCTGAGC
TTCTTCCTCGACGGCGCGACCGGTGGGGTGATCGTGACCCTGCAGACGCTGGTGTTCCTGGCCGCCTTTTTCTTCGCCCC
GAAACACGGCCTGCTGGCATCCAAACGCCGCGTAGCGCGTGAACAGACCGGAGGCCACTGA

Protein sequence : 
MLELLLQPFSYNYMVKAIWVSAIVGAACAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFTGMLAALAM
TLVRHVTRLREDAIIGFIFSTFFAVGLLIVSLNPTSVNVQSIIFGNILGIADEDVLQVEIIIGVSLLILCLVWKDLLAVF
FDENHAVSIGLSPLRLKILFFTLLSACTVAALQTVGAILVIAMVITPGATAYLLTDRFSRLVIIAIVIGALTSSFGAYLS
FFLDGATGGVIVTLQTLVFLAAFFFAPKHGLLASKRRVAREQTGGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-76 67
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-76 67
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-76 67
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-76 67
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-76 67
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-40 41
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-40 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_2131 YP_001478360.1 ABC-3 protein BAC0441 Protein 1e-103 90
Spro_2131 YP_001478360.1 ABC-3 protein BAC0351 Protein 8e-77 67
Spro_2131 YP_001478360.1 ABC-3 protein BAC0352 Protein 1e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_2131 YP_001478360.1 ABC-3 protein VFG0527 Protein 8e-77 67
Spro_2131 YP_001478360.1 ABC-3 protein VFG0528 Protein 1e-40 41