Gene Information

Name : Spro_2130 (Spro_2130)
Accession : YP_001478359.1
Strain : Serratia proteamaculans 568
Genome accession: NC_009832
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2325802 - 2326662 bp
Length : 861 bp
Strand : -
Note : PFAM: ABC-3 protein; KEGG: yen:YE1897 chelated iron transport system membrane protein

DNA sequence :
ATGGAAACTCTGTATCAACTGCTCAGCGAACCGTTCGCCTATCCGTTTATGCAACGGGCGATCCTGGCCGCTATCGTCAC
TGGCGTAGTCTGTGCGGTACTGTCCTGTTATCTGGTGCTCAAGGGCTGGTCGCTGATGGGCGATGCCATTTCGCATGCGG
TGCTGCCCGGCATCGTGCTGGCGTTCGTGCTCGGTATCCCGGTGGTGATCGGCGCGTTTTTCTCCGGTATTTTCTGCGCG
GTCGCCACCGGATATCTGAAAGAAAACAGCCGGGTGAAAGAGGATACGGTGATGGGCATCGTGTTCTCTGGCATGTTCGC
CTTCGGGCTGGTGTTGTTTTCGCGCGTCGATACCGATCAGCATCTGAGCCACATTCTGTTCGGCAATATGCTGGGCATTA
CCGATGCCGAACTGAAACAGACGCTGTTGATGGCCGGTATTACCCTGTTGGTGGTGCTGCTAAAGCGCAAAGATCTGATG
CTCTACTGTTTCGATCCCAACCATGCCAGAGTGATTGGCCTGCCGGTGAAGCTGTTGCATTACGGATTACTGTGCCTGCT
GGCGCTGACCATTGTCGCTTCGCTGCAGGCGGTGGGGGTGATTCTGGTAATTGCGATGCTGATAGCTCCAGGGATTATTG
CCTTTATGCTGTGCCGCAGCTTCGATCGCATGTTGATGGTCGCCACGGTGGTTTCGGTGTTCTCCTGCGTGCTCGGCACC
TTGATCAGCTTCCACATCGACGGCGCTACCGGCCCCTGCATTGTGATCGTACAGGCGATTCTGTTTGTGGTCGCCCTGCT
CTACAGCAAGTTCAGGCCGTTACAACGTCACGATAACGATTTGCTCAACGCCAAGTCCTGA

Protein sequence :
METLYQLLSEPFAYPFMQRAILAAIVTGVVCAVLSCYLVLKGWSLMGDAISHAVLPGIVLAFVLGIPVVIGAFFSGIFCA
VATGYLKENSRVKEDTVMGIVFSGMFAFGLVLFSRVDTDQHLSHILFGNMLGITDAELKQTLLMAGITLLVVLLKRKDLM
LYCFDPNHARVIGLPVKLLHYGLLCLLALTIVASLQAVGVILVIAMLIAPGIIAFMLCRSFDRMLMVATVVSVFSCVLGT
LISFHIDGATGPCIVIVQAILFVVALLYSKFRPLQRHDNDLLNAKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-63 53
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-63 53
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-62 52
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-62 52
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-62 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_2130 YP_001478359.1 ABC-3 protein BAC0442 Protein 8e-105 86
Spro_2130 YP_001478359.1 ABC-3 protein BAC0352 Protein 4e-63 53
Spro_2130 YP_001478359.1 ABC-3 protein BAC0441 Protein 5e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_2130 YP_001478359.1 ABC-3 protein VFG0528 Protein 4e-63 53