Gene Information

Name : Spro_0108 (Spro_0108)
Accession : YP_001476346.1
Strain : Serratia proteamaculans 568
Genome accession: NC_009832
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 116464 - 117633 bp
Length : 1170 bp
Strand : +
Note : PFAM: integrase family protein; KEGG: ypp:YPDSF_3775 phage integrase

DNA sequence : 
ATGCTCCTAACTGACATACAAATCCGACGTTCCAAACCGCAAGAAAAGCCCTATACCCTCAACGATGGTCAAGGCTTGTC
CCTTCTTATCAATACTGACGGCAGTAAAGGCTGGCGCTTTCGCTATCGCTATGCCGGAAAAGCCAAGTTGATGTCCTTTG
GCACCTACCCCTTGGTAACGCTGGCTGAGGCGCGAGAAAAGCGTGGGGAAGCCCGTAAGCAGGTTGCGAATGGCATTGAC
CCAGTGGCAGATAAAAAGGCGCAAAAGCTCGCGCAGAAACTTTCTTTCGAGAACTCCTTTGAAGCGATTAGCCGTGAATG
GCATACGAACAAGGCTGACCGTTGGACTCTAGCCTACAGGGAAGAGATCATGCGTACCTTTGAGCAGGATGTGTTCCCTC
ATATTGGCCAACGCCCCATTGCCGAAATTAAGCCCTTGGAACTGCTGGAAGTACTGCGGCGTATTGAAAAACGCGGAGCA
TTGGAGAAGACCCGCAAGATTCGCCAGCGCTGTGGAGAGGTATTTCGTTATGCAATTATTACCGGTAGGGCGGAGTATAA
CCCAGCCCCAGATCTCGCCAGCGCGCTAGCCGTTCCCAAACAAAAGCACCATCCGTTCCTTTCGGCCGAGGAACTACCTT
ACTTTGTTAAGGATTTGGAAGGATATACCGGTAGCATCATCACTAAGAATGCAGCGAAGATCGTTATGCTGACCGGCGTG
CGCACGCAAGAAATGCGCTTTGCCACGTGGGAAGAGATCGATTTTGAGCGTGCAATCTGGGAGATCCCCGCAGCACGCAT
GAAAATGCGCCGCCTGCACATTGTGCCGCTCTCTACTCAGGTGGTTGAGCTGTTCAAACAGCTACAACCGATCACCGGTC
ACTATCCTTACATTTTCATTGGACGAAACAACCGCAGAAAGCCTATAAGTAAGGAAAGTGTGAATCAGGTTATAGAGCTG
CTGGGATATAAGGGGCGAGCCACCGGTCACGGTTTCAGGCATACGATGTCCACTATCCTACATGAACAAGGGTTTGATTC
CGCATGGATTGAGATGCAACTTGCGCATGTTGACAAGAATGGTATTCGAGGTACTTATAATCATGCTCAATATTTTGCTC
AGCGACAGTCTATGATGCAATGGTATTCTGACAATATTTTAGTGTTATGA

Protein sequence : 
MLLTDIQIRRSKPQEKPYTLNDGQGLSLLINTDGSKGWRFRYRYAGKAKLMSFGTYPLVTLAEAREKRGEARKQVANGID
PVADKKAQKLAQKLSFENSFEAISREWHTNKADRWTLAYREEIMRTFEQDVFPHIGQRPIAEIKPLELLEVLRRIEKRGA
LEKTRKIRQRCGEVFRYAIITGRAEYNPAPDLASALAVPKQKHHPFLSAEELPYFVKDLEGYTGSIITKNAAKIVMLTGV
RTQEMRFATWEEIDFERAIWEIPAARMKMRRLHIVPLSTQVVELFKQLQPITGHYPYIFIGRNNRRKPISKESVNQVIEL
LGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKNGIRGTYNHAQYFAQRQSMMQWYSDNILVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 7e-139 73
aec33 AAW51716.1 Int Not tested AGI-3 Protein 4e-139 73
int AAD44730.1 Int Not tested SHI-2 Protein 5e-137 72
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-136 72
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-136 72
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 7e-137 72
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-138 71
int ACU09430.1 integrase Not tested LEE Protein 5e-138 71
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-138 71
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-138 71
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 7e-109 57
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-108 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_0108 YP_001476346.1 integrase family protein VFG0598 Protein 4e-137 72
Spro_0108 YP_001476346.1 integrase family protein VFG0783 Protein 3e-138 71