Gene Information

Name : Ssed_0919 (Ssed_0919)
Accession : YP_001472658.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1004
EC number : -
Position : 1099834 - 1101000 bp
Length : 1167 bp
Strand : +
Note : KEGG: vpa:VP0236 nucleotide sugar dehydrogenase

DNA sequence : 
ATGAAAGTTGTTATCGTTGGAACCGGTTATGTCGGTCTCTCTAACGCGATTATTCTGGCTCAGAATAATGAAGTGGTTGC
CTGTGATATTGACGAAGAGAGGGTCAATGCATTAAACAATCGACGCTCACCGATTGTCGATAAGGAAGCCGACGAGTACC
TGGCCAACAGAGAGTTGAATTTAACGGCGACGCTGGACAAAGAGTCAGCTTTTAAAGATGCACAATACGTTATTGTTGCT
ACGCCTACAGATTATGATCCTGAAACAAACTACTTTAATACCTCGTCTGTCGAGTCAGTAATAAAAGAGGTGATCGGTCT
GAACCCTGATGCCACGATCGTGATTAAATCGACAGTGCCGGTTGGGTATACCAAGCGTTTAAGTGAAAAGTTGGGTTGTA
ACAATATCATCTTCTCTCCTGAGTTTTTACGTGAAGGCAGGGCCGTTCATGACAATTTATATCCATCACGAATTGTCATT
GGTGAACATTCAGAAAGGGCTGAAATCTTTGCTAACATGCTGGTGGAGGGAGCCATTAAGAAAGATATTCCATTGCTCTT
TACCGACGCTACCGAAGCAGAAGCAATTAAGTTGTTTTCAAATACCTATCTTGCGATGCGAGTGGCTTACTTCAACGAGT
TAGATACCTATGCCGAGACACATGGTTTGTCATCGAGGCAGATTATCGAAGGGGTAGGGCTGGATCCTCGTATCGGCTCC
CACTATAACAATCCGTCATTTGGCTATGGTGGTTATTGCCTGCCTAAAGATACTAAACAGCTGTTGGCGAACTACCAGGA
TGTGCCTAATAACTTGATTAGTGCGATTGTCGATGCGAACGTGACCCGTAAAGACTTTATCGCCGATGCCATCATTAAGC
AGAAGCCTGAAACTGTTGGTCTCTACCGCCTGATTATGAAGTCTGGCTCGGATAACTTCCGTGCCTCTTCGATCCTCGGG
ATCATGAAACGCATCAAGGCGAAAGGAATTAAGGTCGTGGTTTATGAGCCGGTAATGAAGGAGAAAGAGTTCTTTCATTC
TGAAGTGATTGAAGACCTCAATGCGTTTAAACAGATGTCAGATGTTATCGTCTCTAATCGTATGATGGATGAGCTCTCAG
ACGTTGAAGATAGAGTTTATACCCGGGATCTCTTCGGCTCCGACTGA

Protein sequence : 
MKVVIVGTGYVGLSNAIILAQNNEVVACDIDEERVNALNNRRSPIVDKEADEYLANRELNLTATLDKESAFKDAQYVIVA
TPTDYDPETNYFNTSSVESVIKEVIGLNPDATIVIKSTVPVGYTKRLSEKLGCNNIIFSPEFLREGRAVHDNLYPSRIVI
GEHSERAEIFANMLVEGAIKKDIPLLFTDATEAEAIKLFSNTYLAMRVAYFNELDTYAETHGLSSRQIIEGVGLDPRIGS
HYNNPSFGYGGYCLPKDTKQLLANYQDVPNNLISAIVDANVTRKDFIADAIIKQKPETVGLYRLIMKSGSDNFRASSILG
IMKRIKAKGIKVVVYEPVMKEKEFFHSEVIEDLNAFKQMSDVIVSNRMMDELSDVEDRVYTRDLFGSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0068 YP_300158.1 UDP-glucose 6-dehydrogenase Not tested SCC15305cap Protein 8e-89 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_0919 YP_001472658.1 nucleotide sugar dehydrogenase VFG0963 Protein 2e-95 51