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Name : lysS (Ssed_0841) Accession : YP_001472580.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1001438 - 1002940 bp Length : 1503 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGAACAAGTACAAGATGAGAATAAATTAATTGCAGAGCGACGTGCCAAGCTTGAGCACATTCGTGAAAACTGCCC TGCAAATGGTCACCCGAATACCTTCGATCGTAAACACAAAGCGGCAGACATTCAGGCTGAATTTGGTAATAACACCAAAG AAGAGCTTGAAGGCATGGGCATTGTGCGCAGTATCGCTGGCCGTGTCATGGCAAAGCGTGGTCCTTTCCTGGTCATTCAA GATGTCAGTGGACGCATTCAGGCCTATGCCGGAAAAGATGTTCAAAAAGATCTTAAAGCTAAGTTCCAGGGCTTAGATAT TGGTGACATTATCGGCGTGACTGGTCAGCTTCACCTGTCGGGTAAAGGCGATCTTTATGTGAACATGGAAGAGTATGAGT TGCTGACAAAGGCGCTACGTCCATTGCCTGAAAAGTTCCACGGTCTAACTGACCAGGAGACGCGTTACCGTCAGCGTTAC ATCGATCTGATCGTTAATGAAGAGTCTCGTGAAGCCTTCATAATGCGCTCAAAGGTGGTTTCTGCTATTCGTAACTTCAT GGTTAAGAAAGAGTTCATGGAAGTTGAAACGCCTATGATGCACACCATTCCTGGTGGCGCTTCGGCTCGTCCGTTTGAAA CGCATCACAATGCACTCGATATCGCTATGTATCTTCGAATTGCACCAGAGCTTTACCTTAAACGTCTTGTTGTTGGCGGC TTCGAGCGTGTGTTCGAAATTAACCGTAACTTCCGTAACGAAGGTTTGTCGCCACGCCATAACCCAGAGTTCACTATGAT GGAATTCTATATGGCGTATTCAGATTATAAAGATCTGATGGATCTTACCGAAGAGATGCTAAGTTCTATTGCCACCGAAC TGTGTGGTTCTCCAAAACTGCCATACGGTGAGCATGTTGTTGACTTTGGTGGTCCATATGCACGTTTAAGCATGTTGGAT GCAATCAAGAAGTACAACCCGGACAACGCCACTATTCAGTCTATGACTTACGAAGAAGTGAAAGACGTTGAATTTATGCG TAACCTGGCTAAGAGCCTGGGCATGACTATCGAGAAGTTCTGGACCTGTGGTCAGCTTCTTGAAGAGATCTTCGGTGAAA CCGCTGAGACTCAGCTTATGCAGCCTACCTTTATTACCGGTTACCCTGCGGATATCTCACCGCTTGCACGTCGTAATGAC GATAACCATTTCATCACTGACCGTTTCGAGTTTTTCATCGGCGGCCGTGAAGTCGCTAATGGTTTCTCTGAGCTCAACGA TGCAGAAGATCAAGACAACCGCTTCAAGGCACAGGTCGATGCAAAAGATGCCGGTGATGATGAAGCTATGTTCTATGATG CAGATTACATTACTGCGCTAGAGCACGGTCTACCACCAACTGCGGGTCAAGGTATCGGAATCGATCGTCTGGTGATGTTA TTTACGAACACTCACACGATTCGTGACGTGATCCTGTTCCCGGCTATGCGTCCTCAGGGGTAG Protein sequence : MTEQVQDENKLIAERRAKLEHIRENCPANGHPNTFDRKHKAADIQAEFGNNTKEELEGMGIVRSIAGRVMAKRGPFLVIQ DVSGRIQAYAGKDVQKDLKAKFQGLDIGDIIGVTGQLHLSGKGDLYVNMEEYELLTKALRPLPEKFHGLTDQETRYRQRY IDLIVNEESREAFIMRSKVVSAIRNFMVKKEFMEVETPMMHTIPGGASARPFETHHNALDIAMYLRIAPELYLKRLVVGG FERVFEINRNFRNEGLSPRHNPEFTMMEFYMAYSDYKDLMDLTEEMLSSIATELCGSPKLPYGEHVVDFGGPYARLSMLD AIKKYNPDNATIQSMTYEEVKDVEFMRNLAKSLGMTIEKFWTCGQLLEEIFGETAETQLMQPTFITGYPADISPLARRND DNHFITDRFEFFIGGREVANGFSELNDAEDQDNRFKAQVDAKDAGDDEAMFYDADYITALEHGLPPTAGQGIGIDRLVML FTNTHTIRDVILFPAMRPQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 7e-136 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001472580.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-136 | 56 |
