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Name : fliP (Ssed_0083) Accession : YP_001471824.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 91494 - 92222 bp Length : 729 bp Strand : + Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : ATGCTTCGAGCACTGTTGCTTCTCTTTTGCTTACTGGCACCGAGTGCATTTGCAAATGATGGTTTTACGCTATTTACCTT AGATGATGGCCAGCAAAGTCAATCGGTCAACATCAAGCTAGAGATCCTGGCCCTGATGACAGTGCTGAGTTTTCTACCCG CACTGTTAATGATGCTGACCAGTTTTACCCGCATCATTGTGGTGCTGGCTATTTTGCGGCAGGCACTGGGTCTGCAACAG AGTCCGCCTAACAAGGTGTTACTCGGCATCGCTTTAGTGCTCACCCTATTCGTGATGAGACCTGTGGGTCAGGTTATGTA TGATGAGGCTTATCTGCCCTATGATCAGGGGCTGATAGAGTTACCCGAGGCGGTCAATATTGGTGTCGTACCTTTGCGTA AGTTTATGTTGGCGCAGACTCGGGAAACCGATCTTGAGCAGATGCTAAAAATCGCAGATGAACCCGTGACACTCACGGCC GATGAGATCCCCTTCTTTGTGCTTATGCCGGCTTTCGTGTTGAGTGAGCTTAAAACCGCCTTCCAGATTGGTTTCCTCCT GTTCCTTCCTTTTCTTGTTATCGACTTGGTGGTAGCCAGTGTGCTGATGTCGATGGGGATGATGATGCTTTCGCCTCTGA TTATCTCATTGCCTTTTAAGTTGATGGTGTTCGTCCTGGTGGATGGCTGGTCTATGACGGTCAGTACGTTAGTTGCCAGT TTTGGATAG Protein sequence : MLRALLLLFCLLAPSAFANDGFTLFTLDDGQQSQSVNIKLEILALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQ SPPNKVLLGIALVLTLFVMRPVGQVMYDEAYLPYDQGLIELPEAVNIGVVPLRKFMLAQTRETDLEQMLKIADEPVTLTA DEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVSTLVAS FG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 1e-25 | 46 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 7e-24 | 46 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 8e-25 | 45 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-25 | 45 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 8e-26 | 45 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-25 | 45 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-25 | 45 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-25 | 45 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 7e-18 | 44 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 7e-18 | 44 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 7e-18 | 44 |
| hrcR | YP_198720.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 7e-25 | 44 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 5e-21 | 42 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 5e-21 | 42 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 3e-18 | 41 |
| hrcR | AAB06005.2 | HrcR | Virulence | Hrp PAI | Protein | 2e-22 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_001471824.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 2e-43 | 58 |
| fliP | YP_001471824.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 2e-41 | 57 |
| fliP | YP_001471824.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 5e-42 | 56 |
| fliP | YP_001471824.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 4e-45 | 53 |
| fliP | YP_001471824.1 | flagellar biosynthesis protein FliP | VFG0044 | Protein | 1e-21 | 43 |
| fliP | YP_001471824.1 | flagellar biosynthesis protein FliP | VFG0394 | Protein | 2e-22 | 42 |
| fliP | YP_001471824.1 | flagellar biosynthesis protein FliP | VFG0188 | Protein | 4e-22 | 41 |
