Gene Information

Name : Ssed_0079 (Ssed_0079)
Accession : YP_001471820.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : sigma-54 dependent trancsriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 87319 - 88620 bp
Length : 1302 bp
Strand : -
Note : KEGG: shw:Sputw3181_0461 sigma54 specific transcriptional regulator, fis family

DNA sequence : 
ATGCCTCTCTCTAATTTCAGATTAGTCGATGCAGCACTCGCAGAGCAGTGTGTTGAGCAACTCTCTTTGCAAGGCTTTGA
GCTTTGGCAACCGGGCTCCGACACGCCTTGGATCAGCATGATCGATCTATCCAGCTGTACCTGTGATGAGTTGGTAAAAA
AACTTTCCCTCTACCCGGGTAAAAATCAGATCGCACTGCTGGATCCGGAACAAACTGAGCTGGCAACAAGGGCTATGCAG
CTAGGCGTGCAAGACTACCTACTGCTCCCTCTCGATGGTGATCAGGTCATCTCACTACTGCAAAGGTTAAGACGGTTAGA
GCAACCGGATACCGACTTAGTCGTCTCCTCGACGGTGAGCCGTCAGCTATTGATGTTAGCCCATAGGGCTGCAACAACCG
AAGCCAGTGTACTGTTAACCGGTGAGAGCGGTACAGGTAAGGAGCCGATAGCACGTTATATCCATCAAAACTCGAACCGC
GCTAATCAGCCCTTTATTGCCGTCAACTGTGCAGCGATCCCCGAGAGCATTCTTGAGTCAATTCTGTTTGGCCATGTCAA
AGGCGCATTCACTGGTGCATCCAGTGATCAGCCCGGTAAGTTTGAACTTGCCAATGGAGGAACCTTACTCTTAGATGAGA
TCGGTGAAATGCCTTTTATTTTGCAATCTAAGCTATTGCGGGTGCTGCAGGAGAGAGAGGTCGAGCGTCTGGGAGGCCAC
AGATCCATCCCTTTGAATATTCGCGTCATCGCCTCAACGAATAAGGATCTCCGTAAGGCCGTTAAGTCCGGCGAATTTAG
AGAAGACCTATTTTATCGTTTAGACGTATTACCACTGAAAATATCTCCCCTGCGTGAACGACGTGAAGATATTCTGCCGT
TGGCGGAGCACTTTCTGCAAAGGTATAAACAACTCAGCGATAACCAGGCTTGTTATTTCAGTGAAGCTGCGCAACAACGC
CTGCTGTCTCACGATTGGCCTGGCAATGTCAGAGAGCTGGAAAATACCATTCAACGAGCCTTAGTCATGCGCAGAGGCCA
GGCGTTACAAGCTGCCGAGCTGGGAATTGAATCGAAAGAGCATCACGCCAAAGTGAGAGTCGAAAGTTCAGAACAAGGGC
TCAAGGCCTCTAAAAGACAAGCCGAATTCCAGTATATCTTAGATACCCTCAAACGTTTCAACGGCCACCGAAGTCAAAGC
GCTCAATCTCTGGGTATGACAACCAGAGCCTTGAGATACAAGCTGGTTCAGATGCGTGAAGAGGGAATAGATATCGAACA
AGCCTTGGGTCATGCCGCTTAA

Protein sequence : 
MPLSNFRLVDAALAEQCVEQLSLQGFELWQPGSDTPWISMIDLSSCTCDELVKKLSLYPGKNQIALLDPEQTELATRAMQ
LGVQDYLLLPLDGDQVISLLQRLRRLEQPDTDLVVSSTVSRQLLMLAHRAATTEASVLLTGESGTGKEPIARYIHQNSNR
ANQPFIAVNCAAIPESILESILFGHVKGAFTGASSDQPGKFELANGGTLLLDEIGEMPFILQSKLLRVLQEREVERLGGH
RSIPLNIRVIASTNKDLRKAVKSGEFREDLFYRLDVLPLKISPLRERREDILPLAEHFLQRYKQLSDNQACYFSEAAQQR
LLSHDWPGNVRELENTIQRALVMRRGQALQAAELGIESKEHHAKVRVESSEQGLKASKRQAEFQYILDTLKRFNGHRSQS
AQSLGMTTRALRYKLVQMREEGIDIEQALGHAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR AAC35799.1 transcriptional regulator Virulence Hrp PAI Protein 4e-45 43
hrpR AAT96162.1 HrpR Virulence T-PAI Protein 8e-45 41
hrpR AAT96216.1 HrpR Virulence T-PAI Protein 8e-45 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_0079 YP_001471820.1 sigma-54 dependent trancsriptional regulator BAC0467 Protein 6e-60 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_0079 YP_001471820.1 sigma-54 dependent trancsriptional regulator VFG1249 Protein 7e-81 49