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Name : Ssed_0547 (Ssed_0547) Accession : YP_001472287.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 667256 - 669010 bp Length : 1755 bp Strand : + Note : KEGG: shm:Shewmr7_0469 type II secretion system protein E DNA sequence : GTGAAACCAAAGTTAAAGATGCGTCTGGGTGATCTCCTCGTTCAAGAGCAGATCATCAGCGAGCCTCAGTTAATGGAGGC TTTGACCGAGCAGCGAAGTACCGGCAAGAAGCTGGGACGCACCCTGATCGATCTCAACAGTATCTCCGAAGAGCAGCTAC TCAGGTTTCTGTCTCAACAGCTGCACATCCCTTTTATCGATATCAGTAAGCGACCTATTCCTCCGGAGGTTGTTAACCTG TTACCCGAGGTTCAGGCGCGTCGTTTCCGTGCGCTTGTCGTAGAAGATAACGGCGATAGTGCCTTGGTGGCCATGAGCGA TCCCGCTGATCTTCAGGCGATGGATAATCTCGAAGTACTGCTCACCCCTAAAAGATTAGAGATCGCGGTTGTTACCGAGG GGCAGCTGCTCGATGCCTTCGATAATATCTATCGCCGAACTGATGAAATTGCTCAAATTGCCGGAAAGCTCGAAGAGGAA TATGCCGCCGACGATCAATTCGATCTCGCGAGCTTAACCGACAGCGACAGCGATAACGAGACCACAGTTGTTAGATTGCT GCAGTCGATATTCGAAGATGCGGTGCAGATGCGAGCGTCCGATATTCATATCGAACCCGGTGACAAGGTGCTGCGCATCA GACAGCGTATCGATGGCCAACTGCATGAAAATATCCTGCCGGAGGCGAGTATCGCCGCGGCCTTAGTGTTAAGGCTAAAG TTGATGGCAGGTCTGGATATCTCTGAGAAGCGTTTGCCGCAGGATGGCCGGTTTCATATGGAGATTAAAGGCCATCAGAT AGATGTTCGTATGTCGACTATGCCTATTTACCACGGTGAGTCGGTGGTGATGCGTCTGCTGGATCAATCCGCGGGCCTGT TGACCCTGAACGAAACTGGTATGCCACCCGAGATCCTGGAAAGGGTGCGCAAGCAGATTAAACGTCCCCATGGCATGTTG CTGGTAACCGGGCCAACGGGTAGCGGTAAAACCACCACCTTGTATGGTGTGTTGAGTGAGCTCAACACCGCAGATCGTAA AATTATCACGGTCGAAGACCCGGTGGAATATCAACTTCCCAGAATTAACCAGGTACAAGTTAACCATAAGATTGGCTTAG ACTTCTCTAACGTACTGAGAACGACCTTGCGTCAGGATCCGGATATCATCATGGTCGGTGAGATGCGTGACCAAGAGACC GTAGAGATCGGACTCAGAGGCGCCTTGACGGGCCACTTCGTACTGTCGACCCTGCACACCAATGATGCGGTGACCAGTGC GTTACGTCTGCTGGATATGGGGGCGGCGAGTTATCTGGTTGCCAGTGCGTTGAGGGTGATTATTGCCCAGCGTCTGGTGA GGCGAGTATGTCAAAACTGTGCCAGAGAGTATGAACTGACGGCTCAGGATAAGGCCTGGCTCAACAGTACCAGTCAGCAA GATTTTTCTCAGGCTAAATTCAGAATTGGATCGGGCTGTCAAAGTTGTAACGGCAGTGGTTACCGGGGACGAATAGGCAT ATTTGAGATACTCGAGCTCGATGAGGCGATGATCGATGCCATGCGTACAGGCAATCCCCAGGATTTTGCCCGAGCAGCAT ACTTAAGCCCTAACTTTATTCCGTTGGCCGTGTCAGCTTTTAAGTATTTAGCCGAGGGTATGACTACCATAGAAGAGGTG GCTAAACTGGTAGAGGATGTCAATGAGACCGAGTCTCCTCTGTCTATAAGGCAGCAACAAGGAACTGAGTTTTAA Protein sequence : MKPKLKMRLGDLLVQEQIISEPQLMEALTEQRSTGKKLGRTLIDLNSISEEQLLRFLSQQLHIPFIDISKRPIPPEVVNL LPEVQARRFRALVVEDNGDSALVAMSDPADLQAMDNLEVLLTPKRLEIAVVTEGQLLDAFDNIYRRTDEIAQIAGKLEEE YAADDQFDLASLTDSDSDNETTVVRLLQSIFEDAVQMRASDIHIEPGDKVLRIRQRIDGQLHENILPEASIAAALVLRLK LMAGLDISEKRLPQDGRFHMEIKGHQIDVRMSTMPIYHGESVVMRLLDQSAGLLTLNETGMPPEILERVRKQIKRPHGML LVTGPTGSGKTTTLYGVLSELNTADRKIITVEDPVEYQLPRINQVQVNHKIGLDFSNVLRTTLRQDPDIIMVGEMRDQET VEIGLRGALTGHFVLSTLHTNDAVTSALRLLDMGAASYLVASALRVIIAQRLVRRVCQNCAREYELTAQDKAWLNSTSQQ DFSQAKFRIGSGCQSCNGSGYRGRIGIFEILELDEAMIDAMRTGNPQDFARAAYLSPNFIPLAVSAFKYLAEGMTTIEEV AKLVEDVNETESPLSIRQQQGTEF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-77 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-78 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ssed_0547 | YP_001472287.1 | type II secretion system protein E | VFG1876 | Protein | 6e-88 | 43 |
| Ssed_0547 | YP_001472287.1 | type II secretion system protein E | VFG0182 | Protein | 2e-80 | 41 |
