Gene Information

Name : Ssed_4392 (Ssed_4392)
Accession : YP_001476122.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5374001 - 5374678 bp
Length : 678 bp
Strand : -
Note : KEGG: slo:Shew_0097 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAAAATTTTACTTGTAGAAGATGATGCAACCACCATCGAATATGTGGTTAAAGGCTTTATGGAGCAGGGGCATAACAT
CGAGACCGCAAGTGATGGTCATCAGGGCTTGCTCCTCGCGACGAGTATGAAGTATGACCTGGTGATATTAGACCGTATGC
TACCTCAACTTGACGGATTAAAGCTGCTTGCTGCACTCAGGGCAACAGGTAGTCAGACACCGGTATTGATCCTTTCGGCG
CTAAGCCATGTCGATGAGCGTGTAAAAGGCTTGAGAGCGGGTGGCGATGACTATATGACTAAGCCCTTTGCCTTCTCTGA
GTTGCTTGTTCGCGCCGAAAAACTGATGCAGAGAGGCTTTTCTCAGCCTGCCGATACCGAGCTGTCCGTGGGAAACCTGG
TGATGGAGTTGCTTACCCGTAAAGTGACCTTAGACGGTACCGAGCTTATGCTGCAACCTAAAGAGTTTCAACTGTTAAAG
TACTTGATGGAACACCCAAACCAAGTTATTAGCCGCACACTGTTATTCGAAGCCGTGTGGGATTACCATTTTGATCCCCG
TACCAATGTGATTGATGTTCATATCGCTAAGCTCAGACGCAAATTTGAAGAGCTGGGATTTGGTGAGTTGATTGAAACCG
TTCGAGGTGCAGGTTATCGCCTCCGCCAAGGGAATTAA

Protein sequence : 
MKILLVEDDATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQLDGLKLLAALRATGSQTPVLILSA
LSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGFSQPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLK
YLMEHPNQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRLRQGN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-40 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-39 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_4392 YP_001476122.1 two component transcriptional regulator BAC0347 Protein 7e-45 45
Ssed_4392 YP_001476122.1 two component transcriptional regulator BAC0083 Protein 3e-41 45
Ssed_4392 YP_001476122.1 two component transcriptional regulator BAC0111 Protein 2e-46 45
Ssed_4392 YP_001476122.1 two component transcriptional regulator BAC0125 Protein 2e-40 43
Ssed_4392 YP_001476122.1 two component transcriptional regulator BAC0197 Protein 8e-38 43
Ssed_4392 YP_001476122.1 two component transcriptional regulator BAC0638 Protein 7e-38 43
Ssed_4392 YP_001476122.1 two component transcriptional regulator BAC0308 Protein 9e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_4392 YP_001476122.1 two component transcriptional regulator VFG0596 Protein 1e-40 45
Ssed_4392 YP_001476122.1 two component transcriptional regulator VFG1389 Protein 4e-36 43