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Name : Ssed_4358 (Ssed_4358) Accession : YP_001476088.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 5333954 - 5336128 bp Length : 2175 bp Strand : - Note : KEGG: slo:Shew_3619 general secretion pathway protein D DNA sequence : ATGAATAATAAGAAATTTCGCCACAAGCTTATCGCCGGCATGGTGATGGGGGCCTCACTTTTAGCTCCTCAAATCGCTTG GTCTGAGCAGTATGCGGCAAATTTTAAAGGGACAGATATTCAAGAGTTTATCAACATCGTTGGTAAAAACCTGAATAGAA CCATCATCGTAGACCCAACGGTTCGTGGCAAAATAAATGTCCGAAGCTATGACCTGCTTGACGATGAGCAGTATTATCAA TTCTTCCTCAATGTGCTCCAGGTTTATGGCTATGCGGTCGTAGAGATGGACAACAACATCATCAAGGTGATCAAGGATAA GGATGCCAAGACGGCATCGATCAGGGTTGCCGATGATGATAGACCCGGTTTAGGCGATGAGATGGTGACACGTATTGTTG CCCTCTATAACACAGAAGCCAAACAGTTGGCTCCACTGCTACGCCAACTCAATGACAATGCCGGTGGCGGTAATGTCGTT AACTATGACCCATCGAATGTGTTGATGATCTCCGGCCGTGCAGCCGTGGTAAACAAATTAGTTGAGATCGTTCGCCGCGT CGATAAGCAGGGCGATACAGAGGTTCAGGTGGTCTCCCTTGAGTTTGCATCGGCGGGTGAAATCGTTCGAATTATCGATA CCCTCTATCGCTCGACTGCCAATAAGTCTCAGTTGCCGGGTCAGGCACCAAAAGTGGTGGCCGATGAGCGCATGAATGCT GTTTTAGTCAGTGGTGATGAGAAGAGCCGTCAGCGTGTGGTGTCACTGATTAAGAAGCTGGATGCCGAGCAAGCCAGTAT GGGTAACACTAAGGTTCGTTACCTGCGTTATGCCAATGCGGAAGATCTGGTCGAGGTGTTGACCGGGTTTGCCCAGAAGT TGGTCGATGATAAAGATGGTGGCGCGCAGCAAGGTGGCAGTAAACGTCGTAATGAAATTAACATTATGGCCCATGCCGAC ACCAACGCCTTGGTCATCAGCGCCGAGCCGGATCAGATGCGCACCATCGAGAGTGTTATCAATCAGCTCGATATTCGCCG TGCTCAGGTATTGGTGGAGGCGATTATCGTTGAGGTCGGCGAAGGGGATGATGTTGGCTTCGGCGTACAGTGGGCCACAG CTGCCGGCGGTGGTACTCAGTTTAATAATTTAGGCCCTACAATTGGTGAAATTGGCGCCGGTGTCTGGCAGGCTCAGGAA AAAGAGGCTTCTCAAACCTGTACCGGATCGGGTGATAACAAGACCTGTACCGATAACCCCGCGACTCAAGGTGATATCAC CTTGTTGGCTCAAGCCTTAGGCAAGGTTAACGGTATGGCATGGGGTGTTGCCATGGGCGACTTCGGGGCACTTATTCAGG CCGTTTCCAGCGATACGAAATCGAATGTGCTCGCGACTCCCTCTATCACCACACTGGATAACCAGGAAGCGTCGTTTATC GTCGGTGATGAGGTACCAATTTTGACCGGCTCGACTTCGAGTTCGAGTAATACCAACCCATTCCAAACGGTGGAACGTAA AGAGGTCGGGGTTAAGCTTAAAGTTGTGCCTCAGATCAACGAAGGTACCTCGGTTAAGTTAACCATCGAGCAGGAAGTCT CTGGCATTAACGGTAAAACCGGTGTCGATGTAACCTTCGCGACCCGTCGTCTGACAACCACTGTAATGGCCGATTCGGGT CAGATTGTGGTCTTGGGGGGCTTGATCAAAGAAGAGGTGCAGGAGAGTGTACAGAAAGTCCCCTTCCTCGGCGATCTTCC TATTATCGGTCATCTGTTCAAGTCTTCATCAAGCGGTACGAGAAAAACTAATTTGATGGTGTTTATCAAGCCAACCATTA TTCGTGACGGCATTACCATGGAAGGCATCGCAGGGCGTAAGTACAACTACTTCCGAGCTCTGCAGCTTGAGCAGCAGGAT CGCGGTATTAACTTAATGCCAGACAGCGAAGTGCCTATACTCGAAGAGTGGAACCAATCCGATTACCTTCCACCCGAAGT TAACGAGATCCTTGAGCGTTATAAAGAGGGCAAAGGTCTAGCTACTAAGATGCGTGAAACGGATCCGGCCTTGAAGACGA TATCTGAGAGTAAAGAAAAAGATCAACAAGAGAGCGAAGAAAGCTCAAGCGAAAATAACACTTCAGCCACCACCGAAGAT AAAGATGATGAGTGA Protein sequence : MNNKKFRHKLIAGMVMGASLLAPQIAWSEQYAANFKGTDIQEFINIVGKNLNRTIIVDPTVRGKINVRSYDLLDDEQYYQ FFLNVLQVYGYAVVEMDNNIIKVIKDKDAKTASIRVADDDRPGLGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV NYDPSNVLMISGRAAVVNKLVEIVRRVDKQGDTEVQVVSLEFASAGEIVRIIDTLYRSTANKSQLPGQAPKVVADERMNA VLVSGDEKSRQRVVSLIKKLDAEQASMGNTKVRYLRYANAEDLVEVLTGFAQKLVDDKDGGAQQGGSKRRNEINIMAHAD TNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVGEGDDVGFGVQWATAAGGGTQFNNLGPTIGEIGAGVWQAQE KEASQTCTGSGDNKTCTDNPATQGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTKSNVLATPSITTLDNQEASFI VGDEVPILTGSTSSSSNTNPFQTVERKEVGVKLKVVPQINEGTSVKLTIEQEVSGINGKTGVDVTFATRRLTTTVMADSG QIVVLGGLIKEEVQESVQKVPFLGDLPIIGHLFKSSSSGTRKTNLMVFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQD RGINLMPDSEVPILEEWNQSDYLPPEVNEILERYKEGKGLATKMRETDPALKTISESKEKDQQESEESSSENNTSATTED KDDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-138 | 50 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 1e-145 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ssed_4358 | YP_001476088.1 | general secretion pathway protein D | VFG2047 | Protein | 7e-137 | 49 |
