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Name : Ssed_4357 (Ssed_4357) Accession : YP_001476087.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 5332390 - 5333964 bp Length : 1575 bp Strand : - Note : KEGG: slo:Shew_3618 general secretory pathway protein E DNA sequence : ATGATGAGTGAGACTCAAGCCTCTCACAATGATGAGCTGGCGCAAGTGACCGATGAGCTTGGGCTGGCAGTCGAAAGTGA AACCGATGAGGTGTTTCACTCCACGAGTAAGGAGCGTTTACCTTTTGCCTTTGCACATCGCTTCGAAGTGGTACTGGATA GTGTAAATGAGCCGGGTCTTACCCTGTTTCATACCGCTTCCACGCCAGTCGAAGCTTTACTCGAGGCTCGCCGCTATACA GGTAAGGAGCTGCCTCTGGTTCAGCTTGCGCCGGACGAGTTCGAGGCAAGGCTAACACAGGCTTATCAGGCGAACTCTTC AGAGGCTCAGCAGCTGATGGAAGATATCGGCAATGAGATGGATCTGTTTACCCTGGCCGAGGAGTTGCCGCAGACCGAAG ATCTGCTTGAAGGCGATGACGATGCGCCGATCATTAAATTGATCAACGCCCTGTTATCGGAAGCGATTAAGGAAGAGGCG TCCGATATTCATATCGAGACCTACGAGAAACAGCTTGTTGTGCGTTTCCGGGTCGATGGTGTACTCAAAGAGGTGCTCAA GCCGAACCGTAAACTCTCGTCACTCTTGGTTTCACGTATCAAGGTGATGGCACGTCTGGATATCGCCGAGAAACGTGTGC CTCAAGATGGCCGCATCTCGCTACGTATTGCCGGTCGTGCGGTCGATGTTCGTGTATCGACGATGCCGTCGAGTCATGGC GAGCGTGTGGTTTTGCGTCTGCTCGATAAAAATGCGGGTAACTTAGATCTTATCCAACTGGGCATGACCGAAGCGGTACG CATTCAGTTCGATGAACTGATCCGTAAACCTCACGGTATTATCCTGGTCACCGGACCTACGGGTTCGGGTAAGAGTACGA CCCTCTATGCCGGATTAACCGAACTCAACACCAAAGATACCAATATTCTTACCGTCGAAGACCCCATCGAGTATGAGCTT GAAGGGATCGGTCAGACTCAGGTGAACACTAAGGTCGATATGACTTTTGCCAGAGGTCTGCGTGCGATTCTGCGACAAGA TCCCGATGTCGTGATGATTGGTGAGATCCGTGATTTAGAGACGGCTCAAATTGCGGTTCAGGCTTCATTGACGGGCCATA TGGTACTGTCGACCTTGCATACCAACACAGCCTCAGGTTCGATTACCCGATTACAGGATATGGGTGTCGAACCTTTCCTC GTCTCATCGAGTTTATTGGGCGTGTTGGCTCAACGATTGATCCGAACCCTGTGCTCCGAGTGTAAGTCTGAACACGCACC GGCTCTGAGTGAACGTGCGTTACTGGGCATGAAAGACGATGATACACGAGTGATCTATCGCGCTCAGGGATGCAAGGCAT GTGGCCATAATGGCTATCGTGGACGTACAGGTATTCATGAGTTACTCGTGGTCGATGACGATGTTCGTGAACTCATTCAT ACCGGTCGCGGAGAATTGGCGATTGAGAAACATATTCGACAATCGACGCCGAGTATTCGTCATGATGGTATGAGTAAGGT ACTTGCTGGGATCACAACCCTGGAAGAAGTGTTGCGTGTAACCCGCGAGGAATAA Protein sequence : MMSETQASHNDELAQVTDELGLAVESETDEVFHSTSKERLPFAFAHRFEVVLDSVNEPGLTLFHTASTPVEALLEARRYT GKELPLVQLAPDEFEARLTQAYQANSSEAQQLMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEA SDIHIETYEKQLVVRFRVDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIAGRAVDVRVSTMPSSHG ERVVLRLLDKNAGNLDLIQLGMTEAVRIQFDELIRKPHGIILVTGPTGSGKSTTLYAGLTELNTKDTNILTVEDPIEYEL EGIGQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHMVLSTLHTNTASGSITRLQDMGVEPFL VSSSLLGVLAQRLIRTLCSECKSEHAPALSERALLGMKDDDTRVIYRAQGCKACGHNGYRGRTGIHELLVVDDDVRELIH TGRGELAIEKHIRQSTPSIRHDGMSKVLAGITTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-158 | 66 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-158 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ssed_4357 | YP_001476087.1 | general secretory pathway protein E | VFG2048 | Protein | 5e-158 | 65 |
| Ssed_4357 | YP_001476087.1 | general secretory pathway protein E | VFG0182 | Protein | 1e-153 | 65 |
| Ssed_4357 | YP_001476087.1 | general secretory pathway protein E | VFG1876 | Protein | 6e-140 | 59 |
| Ssed_4357 | YP_001476087.1 | general secretory pathway protein E | VFG0233 | Protein | 6e-87 | 48 |
| Ssed_4357 | YP_001476087.1 | general secretory pathway protein E | VFG2426 | Protein | 3e-79 | 46 |
