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Name : Ssed_4356 (Ssed_4356) Accession : YP_001476086.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 5331163 - 5332386 bp Length : 1224 bp Strand : - Note : KEGG: slo:Shew_3617 general secretion pathway protein F DNA sequence : ATGCCAGCATTTGAATACAAGGCGTTAGATTCAAAAGGTAAGCAACAAAAAGGTGTGATGGAAGCCGATACGGCGCGTCA TGCTCGAGGTCAGCTTCGCGAACAACGTTTGATGCCGCTCGAGATCACCCCGGTTGTTGAAAAAGAATCCAAAGCGAAAT CGACCGGTAAGAGTCTCTTTCAACGAGGGATCTCAGTTGCGGAACTCGCGTTAATCACCCGTCAGGTGGCAACCTTGGTT GCGGCGGGTTTACCCGTCGAAGAGGCATTGAAGGCGGTAGGACAGCAGTGCGAGAAAGATCGTTTAGCCAGCATGATTAT GGCGGTCAGATCCCGTGTCGTCGAAGGTTATAGCCTGGCAGATTCCATGGCAGAGTTTCCCCATATTTTCGATGATCTCT ATCGCGCCATGGTGGCATCGGGTGAAAAATCCGGTCACCTCGAAGTCGTGCTTAACCGTCTTGCCGATTACACCGAGAGA AGACATCAGTTGAAGAGTAAGATGACGCAGGCGATGATCTACCCTGTGGTGCTTACTGTCGTGGCAATCAGTGTTATCGC GATATTGCTAGCCGCTGTTGTACCTGAGGTGGTGGGTCAGTTTGAGCATATGGGACAGGAGTTGCCCTGGACAACCTTGC TGTTGATCGCTTCATCTGATTTTGTCAGAGATTACGGCTTGCTGGTTTTAGGTGTCATTGTCATAGGCTTTGTGCTGTTG AAGCGGCTCTTAACGAAAGCCGAATATCGAATGAAGTATGACAGCTTACTACTCGTGTTTCCGGTCATAGGCCGTGTCAG CAAAGGGCTTAATACTGCCAGATTTGCACGAACCTTAAGTATTCTGACCGCCAGTGCGGTGCCACTGCTGGATGCAATGC GTATTGCCAGCGAAGTGCTTATTAATGTAAGAGTACGAGCTGCGGTTGAAGATGCTACCGCCAGAGTTCGGGAAGGTACC AGTTTAGGTGCAGCACTGACTAATACGAAACTTTTCCCTCCTATGATGCTCTATATGATCACATCGGGTGAAAAGAGTGG TCAACTTGAGCAGATGCTGGAGCGAGCCGCCGATAACCAAGACCGAGAGTTCGAGTCCAATGTGAATATTGCGCTGGGTG TATTTGAACCTCTGCTCGTGGTGAGTATGGCTGCTGTGGTGCTGTTTATCGTGTTGGCTATTCTGCAACCGATCTTAGAG CTGAATAATATGATCAGTGGCTAA Protein sequence : MPAFEYKALDSKGKQQKGVMEADTARHARGQLREQRLMPLEITPVVEKESKAKSTGKSLFQRGISVAELALITRQVATLV AAGLPVEEALKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTER RHQLKSKMTQAMIYPVVLTVVAISVIAILLAAVVPEVVGQFEHMGQELPWTTLLLIASSDFVRDYGLLVLGVIVIGFVLL KRLLTKAEYRMKYDSLLLVFPVIGRVSKGLNTARFARTLSILTASAVPLLDAMRIASEVLINVRVRAAVEDATARVREGT SLGAALTNTKLFPPMMLYMITSGEKSGQLEQMLERAADNQDREFESNVNIALGVFEPLLVVSMAAVVLFIVLAILQPILE LNNMISG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-85 | 55 |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 1e-85 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ssed_4356 | YP_001476086.1 | general secretion pathway protein F | VFG2049 | Protein | 7e-83 | 55 |
| Ssed_4356 | YP_001476086.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-83 | 49 |
| Ssed_4356 | YP_001476086.1 | general secretion pathway protein F | VFG1870 | Protein | 1e-73 | 44 |
