Gene Information

Name : Ssed_4246 (Ssed_4246)
Accession : YP_001475978.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5215460 - 5215888 bp
Length : 429 bp
Strand : +
Note : KEGG: she:Shewmr4_3221 hypothetical protein

DNA sequence :
ATGACTATCAAGATAAAACACCAAGATCTCTGCTTGCCCATATCACCCATGTTTGCCATGCACTTGGCGGATCTAATCAG
CGACCATAAAGCTGCTTCAGCCGTTACCATCAACTTCAGAGATCCTAATTACACGGCCGAACGTGGTGGCTTCCATCCAG
TGGAGGTTAGGCTAGAAAAAGAGGTCGATGAGGAACATGGCGAGCAGTGGCGTATCTGCTATATCACCGACTTTAGCTAT
GTCGGTGTTGGCTACATGACCGAGCTAGCCAAGGAACTGGACTTCGACTTTAATAATGGAGTATTTCAACACCTGATGGG
GGCAACAGCACTCGAGCAAGCAAGGGAAATCCACCCAATATGGGAGCAAAACTTTCTCGCTTATAGCCTTGGGATAAAAG
CTTACCAAGTTGAGGTTAAGACAGACTGA

Protein sequence :
MTIKIKHQDLCLPISPMFAMHLADLISDHKAASAVTINFRDPNYTAERGGFHPVEVRLEKEVDEEHGEQWRICYITDFSY
VGVGYMTELAKELDFDFNNGVFQHLMGATALEQAREIHPIWEQNFLAYSLGIKAYQVEVKTD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1805 NP_231440.1 hypothetical protein Not tested VPI-2 Protein 8e-17 44
VC0395_A1402 YP_001217345.1 hypothetical protein Not tested VPI-2 Protein 8e-17 44
VPI2_0036 ACA01851.1 hypothetical protein Not tested VPI-2 Protein 6e-17 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_4246 YP_001475978.1 hypothetical protein VFG1138 Protein 2e-17 44