Gene Information

Name : Ssed_4209 (Ssed_4209)
Accession : YP_001475941.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : 4Fe-4S ferredoxin
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG0437
EC number : -
Position : 5171030 - 5171725 bp
Length : 696 bp
Strand : -
Note : KEGG: slo:Shew_0244 4Fe-4S ferredoxin, iron-sulfur binding domain protein

DNA sequence : 
ATGTTAGATAGACGTTCCATATTAAAAATGGCGGCCGGCGGCGCCATGCTTGCAATCGTACCTAGTGCACAGCTGCAAGC
TAAGACTCCAGGAAAACGCTTGGCCATGGTGTTTGATGTGCGCCGCTGTACCGGCTGTTTATCTTGCACCGTATCCTGTG
CCATGGAAAATCAGACTGAGGCGGGAAGAGGCAGAACTCGTGTCAATCAAGCCTGTATAGAGCAAGGTGATAGCTTTGCG
ACTCTGGCCGTACCTAATCAGTGTAATCAATGTGATAACCCTGCCTGTGTATATGTCTGTCCCGTTGAGGCGACTTATAA
GCGTGAAGAAGATGGCATCGTGGTTATCGACCACGAAGAGTGCATTCATTGCCAGCTCTGTGTCGACGCCTGCCCTTATG
GCGCAAGACGCAAAGATGAAACCTTAGAAACTCCTCCCGAAAAATGTAACTTCTGTATTCATCGCGTTTCAGCGGGTCTG
CTTCCTGCCTGTGTAGAGACTTGCATCGGTGAGGCCAGAAGTTTCGGCGATCTTAATGATCCGAAGAGTAAGGTTTCTCA
GTTAGTCAGAGACAATAAGGTATATGCCATGCTCTCTGAGTCGGGCACTAAGCCCAATATTTTTTATATCGGTTTACCCG
AGCAGGCAGATGATCAAGAGATCTTGTCGCTTAACTTCCTCGAATGGCAACGCTAG

Protein sequence : 
MLDRRSILKMAAGGAMLAIVPSAQLQAKTPGKRLAMVFDVRRCTGCLSCTVSCAMENQTEAGRGRTRVNQACIEQGDSFA
TLAVPNQCNQCDNPACVYVCPVEATYKREEDGIVVIDHEECIHCQLCVDACPYGARRKDETLETPPEKCNFCIHRVSAGL
LPACVETCIGEARSFGDLNDPKSKVSQLVRDNKVYAMLSESGTKPNIFYIGLPEQADDQEILSLNFLEWQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrB YP_216393.1 tetrathionate reductase complex subunit B Virulence SPI-2 Protein 2e-42 45
ttrB NP_805056.2 tetrathionate reductase subunit B Virulence SPI-2 Protein 2e-42 45
ttrB NP_460350.1 tetrathionate reductase complex subunit B Virulence SPI-2 Protein 2e-42 45
ttrB CAB37414.1 tetrathionate reductase subunit B (TtrB) Virulence SPI-2 Protein 1e-42 45
ttrB NP_456142.1 tetrathionate reductase subunit B Virulence SPI-2 Protein 2e-42 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_4209 YP_001475941.1 4Fe-4S ferredoxin VFG0486 Protein 8e-43 45