Gene Information

Name : Ssed_3953 (Ssed_3953)
Accession : YP_001475685.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4830710 - 4831378 bp
Length : 669 bp
Strand : +
Note : KEGG: slo:Shew_3201 ABC transporter-related protein

DNA sequence : 
ATGACCGAGCAGATTGTTCAACTCAAAGGGGTTAGCAAAGAGTTTATCGATGGCGGGCAACACCACCGGGTGCTCGATAA
CCTCGACCTGACGCTGAGCAGGGGCGAGACCATAGCCCTCACCGGTGCCAGTGGTAGCGGCAAGAGTACCCTACTCAACC
TGATAGCAGGTTTCGAATATCCCAACTCGGGTGAACTGATTTTACTCGATGACAATACGGCAGCATGGAAAGACCATCGC
TGGAGTCAATTTCGTCATCAACAACTGGGTGTCGTGTTCCAGCAATTTAACCTTCTAACACCGCTTAACGTCAGAGATAA
CATCGCCTTCCCCTTAAGGATGAACCGTAAACCCTGGAGCCCTTGGTGCGATAACCTCGTCGATTGTTTGGGGTTAACTT
CTCTACTGAATCGACACGTCGATGCCCTATCCGGTGGTCAACAGCAACGTGTTGCTATCGCCAGAGCCCTGGCCCACCAA
CCCGCACTACTGCTAGCCGATGAGCCCACGGGAAATCTGGATCAGAGCGCCAGCCAGGAGGTGATGTCACTGCTAAAAAC
CTTAGCGAGCGAACAGCAAACCACAGTGCTCATGGTCACCCACTCTCTCGAGTGCGCCAGTTTCATGGAGAGACGCTGGC
ATCTGGAGTTGGGACGTATCCATGAATAG

Protein sequence : 
MTEQIVQLKGVSKEFIDGGQHHRVLDNLDLTLSRGETIALTGASGSGKSTLLNLIAGFEYPNSGELILLDDNTAAWKDHR
WSQFRHQQLGVVFQQFNLLTPLNVRDNIAFPLRMNRKPWSPWCDNLVDCLGLTSLLNRHVDALSGGQQQRVAIARALAHQ
PALLLADEPTGNLDQSASQEVMSLLKTLASEQQTTVLMVTHSLECASFMERRWHLELGRIHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-24 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-27 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-27 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-27 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_3953 YP_001475685.1 ABC transporter-like protein CP001581.1.gene798.p Protein 2e-33 42
Ssed_3953 YP_001475685.1 ABC transporter-like protein NC_012469.1.7686878. Protein 4e-33 41