Gene Information

Name : Ssed_3940 (Ssed_3940)
Accession : YP_001475672.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Unknown
Product : catalase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0753
EC number : -
Position : 4812899 - 4814380 bp
Length : 1482 bp
Strand : -
Note : KEGG: sbl:Sbal_0894 catalase

DNA sequence :
ATGAATAAGCAAAATATGACAGAGCAAACCAACTACCTGACCAGCCAAAATGGCGCGCCGGTTGCTGATGATCAAAACTC
ATTGACGGCGGGAGAGCGTGGACCTGTACTGCTGCAAGATTTTCATCTGTTAGAAAAACTCGCTCACTTCAATCGCGAAC
GAATTCCGGAGCGAGTGGTCCATGCGAAAGGTACAGGGGTATATGGCACTTTTACCGTGACAAAAGATTTGAGTGCGTAC
ACGATTGCGGATCACTTTAATGAAGTGGGCAAACAGACTGAGACCTTCGTGCGTTTCTCTACCGTAGGCGGTGAGATGGG
ATCGGCCGATGCCGAGCGAGATCCCCGGGGCTTCGGTCTGCGTTTTTACACCGCTCGTGGTAATCACGACATAGTCGGAA
ATAACACGCCAACCTTTTTCCTGCGTGACGGGATTAAGTTTCCGGACTTTATCCATACCCAAAAGCGTAACCCTCAGACA
AACCTGAAAGATCCGCAAGCAATGTGGGACTTCTGGGCATTGAACCCCGAGGCTTTACATCAGGTCACTGTGCTGATGTC
TGATCGCGGGATCCCGGCTAACTATCGTCAGATGAATGGCTATGGTTCGCACACCTACTCGCTCTGGAATGCGAAGGGTG
AACGCTTCTGGGTTAAATTCCACTTTAAGACCAAGCAGGGAATCGCTAACTTGACCCCTGAGCAGGCCGATATTTTAAAG
GGTATCGATCCCGACTCATCACAGCGAGACATGGTCGCGGCGATAAACGATGGCAACTTCCCACGTTGGTCGGTGAAAGT
ACAGATCATGCCTGAGGCTGATGCGAATACCTATTCTATTAACCCATTCGACTTGACCAAGGTATGGCCACATGGGGATT
ACCCGCTGATCGAAATTGGAGAGCTGGAACTCAACCGTATGCCGGAAAATTACTTTGCCGAAGTCGAGCAGGTAGCATTA
GCACCAAGCAATCTGGTTCCGGGGGTTGGCGCCTCACCGGATAAGATGTTGCAAGCCCGATTATTCGCATATGCCGATGC
TCAGCGCTACCGTATCGGGGCTAACTATAACCAGCTACCGGTAAATTGCCCTCATGGGACTAAGGCAAACCATCATCAAA
GAGCCGGAGCGATGGCTGGCACTCAGTGTCCTTATCATGGCAGTCAGACCGGCGGTGATGCTTCTGCAAACTATGGTCCG
AACAGCCGCATTGAAGGCTTGAGCGACACCTCTCAGTTTATCGAGCCACCTTTGCGTCTCGATGGCGAGGCCGACAGATA
CAGTCGTTATAACCAAGATGATTTTACTCAGGCGGGTAACCTGTATCGCATTCTTTCCGAAGAGGAAAAAGCGCGCTTGA
TCAACAATATCTGCGGAACCCTGAGTCAGACCACACTCGATGTGCAGCAGACCATGGTCGAACACTTCACTAAAGCCGAT
GCCGACTACGGTCAGCGCATCAAACAGGCTTTAGGTTTGTAA

Protein sequence :
MNKQNMTEQTNYLTSQNGAPVADDQNSLTAGERGPVLLQDFHLLEKLAHFNRERIPERVVHAKGTGVYGTFTVTKDLSAY
TIADHFNEVGKQTETFVRFSTVGGEMGSADAERDPRGFGLRFYTARGNHDIVGNNTPTFFLRDGIKFPDFIHTQKRNPQT
NLKDPQAMWDFWALNPEALHQVTVLMSDRGIPANYRQMNGYGSHTYSLWNAKGERFWVKFHFKTKQGIANLTPEQADILK
GIDPDSSQRDMVAAINDGNFPRWSVKVQIMPEADANTYSINPFDLTKVWPHGDYPLIEIGELELNRMPENYFAEVEQVAL
APSNLVPGVGASPDKMLQARLFAYADAQRYRIGANYNQLPVNCPHGTKANHHQRAGAMAGTQCPYHGSQTGGDASANYGP
NSRIEGLSDTSQFIEPPLRLDGEADRYSRYNQDDFTQAGNLYRILSEEEKARLINNICGTLSQTTLDVQQTMVEHFTKAD
ADYGQRIKQALGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
katA ABD94664.1 catalase isozyme A Not tested ExoU island A Protein 5e-124 54
katA YP_005680448.1 catalase Not tested PiCp 3 Protein 4e-103 47
katA YP_005682539.1 catalase Not tested PiCp 3 Protein 4e-103 47
katA YP_003782575.1 catalase Not tested PiCp 3 Protein 4e-103 47
katA YP_005684630.1 catalase Not tested PiCp 3 Protein 4e-103 47
katA YP_005126717.1 catalase Not tested Not named Protein 1e-104 47