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Name : rph (Ssed_0378) Accession : YP_001472119.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Unknown Product : ribonuclease PH Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0689 EC number : - Position : 442841 - 443554 bp Length : 714 bp Strand : + Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs DNA sequence : ATGCGCCCTAGCGACAGAACCCCAGCTCAATCACGTCCAGTGACAATTACTCGTCAGTTTACAGCTCATGCTGAAGGCTC TGTTTTAGTTGAGTTCGGTGACACTAAAGTACTTTGTACTGCCAGCTTCGAAGAGGGAGTTCCACGTTTTCTTAAGGGAA AAGGTCAAGGTTGGGTTACTGCTGAGTACGGCATGCTGCCGCGTTCGACTCACAGCCGTATGAACCGTGAAGCTGCTCGT GGCAAGCAATCTGGTCGTACTCAGGAGATCCAGCGTCTTATCGGTCGCTCACTACGTGCAGCCGTTGACATGAAGGCTCT GGGTGAAAACACCATCGTTATCGATTGTGATGTAATTCAGGCCGATGGTGGCACGCGTACCGCTGCTATCACTGGCGCAT GTGTTGCCTTGGTTGATTCGCTTAACTGGGCTCGTGGAAAGGGCATTCTGAAAACAAACCCACTTAAGTTCCTTATCGCC GCAGTCAGTGTTGGTATCTACAAGGGCGAGCCAATTTGCGATCTGGAGTATATCGAAGACAGCGAAGCTGAGACCGATAT GAATGTTGTGATGACAGAAACCGGCAAGATGATCGAGATCCAGGGTACTGCTGAAGGCGAACCATTTAGCCATGAAGAGC TACTGAGTTTACTGGAGTTGGCTAAGCACGGTATTCGTGAAATTGTCGATATACAGAAAGCGGCATTGAGCTGA Protein sequence : MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGKGQGWVTAEYGMLPRSTHSRMNREAAR GKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQADGGTRTAAITGACVALVDSLNWARGKGILKTNPLKFLIA AVSVGIYKGEPICDLEYIEDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKAALS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rph | YP_001800860.1 | ribonuclease PH | Not tested | Not named | Protein | 2e-60 | 58 |
