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Name : Ssed_3573 (Ssed_3573) Accession : YP_001475305.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : chaperone endopeptidase Clp ATP-binding chain B,ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4353810 - 4356272 bp Length : 2463 bp Strand : + Note : KEGG: pin:Ping_1040 chaperone endopeptidase Clp ATP-binding chain B,ClpB DNA sequence : GTGTTTCAGCAATATATCCGTCAATGCAATCAAGAGGTCCACAAGACCCTCAATGCCGCTATCGCAGAACTGGCAAACGC CCATCAGAATGTACTGACCCCTGAGCATATCCTGCTTGGCTTACTATCACTTCCGGGCTCTGAAGCAGCTCAGCTACTAC AACAGATATTGCCCGATCCCGAGAAGAGTATCGAAGCCCTGACCCGGGCCGTGTATCACGATCATGAAAATACTCCTCTG AAGGGCGATACCACTCAGGTGGTCGCCGCACAGGAAGTCGAAGAGATTTTCGGCATAGCCCTTAGTGAAGCCAAACGACT CGGCGATGCTTACATAGGTACGGGCAGCCTGTTACTGGCCCTGTGCGATAAGAGGGCCGGCGTCACCGCCATTCACCTGA ATAATCAGGGGATCAAGGTGGGCCCGGCTCGTGAGGCGCTGGTAAAACTGAGAAGTGGCAAAACCTTAGACACGCCCGAT GCCGAGGGCCGCAGCGATCCCTTAGATGAATATACCCAAGATTTAACAGAGATGGCCCGTAATAACCAACTCGACCCGGT TATTGGCAGAGAGGATGAGATAGGACGAGTCATTCAAACCCTATCCAGACGTAAGAAGAATAATCCGGTACTTATAGGTG AGCCCGGTGTAGGTAAAACCGTGATAGTCGAGGGGTTAGCCCAGCGTATCGCCAATGCTGAGGTGCCCGATACCCTGCGT GATAAACGCCTGCTCTCATTAGATCTCGCCGAGCTGGTCGCCGGGGCCAATATGCGCGGAGAATTTGAGGAGCGTCTCAA GGGGGTCAGGGATGCGGTGATAGAGGCAAAGGGGCAGATCATTCTCTTCATCGATGAACTGCATACCGTGGTGGGTGCCG GCGCCGGCGCTGGCGGACTGGATGCCCCCGCCCTGTTAAAGAGTGCGCTGGGACGAGGAACACTACAGCTGATAGGTGCA GATACACTCGATGAATACCACAGATATGTCGAGGCAGATAAAGCTCTGGAGCGGCGTTTTCAACCCATCTTAGTGCGCGA GCCCAGCATAGAGGAGACCATAGATATCCTCAATGGCTTGGCTGGAAAATATGAGGGCCACCATGATATAGAATACCAGC CGGAGGCGCTGGAGGCCGCGGCCAGACTGTCGGAGCGTTATATCGCGGACAGACACCTGCCGGATAAGGCAGTGGACCTT ATCGATGAAGCCGGAGCCGATAGACACCTGCACCTGCTGGCGCTGTCGAGACCGATGAAGGAGCTTGAGCGCAAGCGTCA GGCACTGCTGTCAGGCAAGCAAAAAGCCTATAACGAGCAGGCCTTCGAACGTGTCGCCAACATGCAGACCGAGATCCTTA AATTAGAACAGCAGCTCTCGCTACAACGTGAACAGCAAACCACCGATACCGCCAGTGAAGATAAGGCGGTCAACCCCGAA GATATCGCCCGAGTGGTCGCCCGCTTGACCGGGATCCCGGCCGCCCGCCTGGCCGAGTCTGAGGTAGAGAAGCTGTCTCA TATGGAAGACATGCTACATAAGCGCATCATAGGTCAACAAGATGCCGTGTCTGCGGTGGCCAATGCCATTCGCCGTAACC GAACCGGTATCAATCGCAGTCATCGCCCCATCGGCTCCTTCCTGTTTCTCGGCCCGACCGGAGTAGGTAAAACCGAGCTG GCAAAGGCGCTGGCGGAGTTTATGCTCGATGATGAGAGCCGCATAGTACGACTGGATATGTCCGAATATATGGAGCGTCA CGAGGTGTCCAAGATGATCGGGGCACCACCGGGCTATATCGGCTACGGTGAAGGGGGGCAGCTCACGGAAAAGGTCCGCC GTAATCCCTACACCATCATACTGCTGGACGAGATGGAGAAGGCGCATCCCGATGTGTTTAACATGCTGTTGCAGATCTTA GAAGATGGCCGGCTCACCGACGCTCAGGGACGCACCATCTCGTTTCGTAACACCTTGCTGATAGGCACCTCGAACCTTGG GTCCGAGTCACTGATAAGCGACCGCACGCCGGTCGGGTTTATCTACAGCGAAGATCCGGACTATGAGGCAGCCCGTCGCA CCGTAATGAACGAGGTGAAGAAGTTCTTTAAACCCGAGTTTCTCAACCGACTCGATGAGGTGATCGTATTTCACTATCTG ACTCAGGAGGATGTCCTCAAGATAGCCAAGTTGCTGATATCATCGCTGTGTAAACAGATGAAAGACAACGATATCACCCT GCATATCGACGCCGATGTGATAGAGCGGGTAGCTCAGGACGGCTTCGAGCCCGCCTACGGTGCCCGCCCGCTAAGGAGAG AGATAGAGAAGCAGATAGAGAATCCCATCGCCTCGCTTATCGTCAACAATAAAAATATTACCGGCAGTGAAATTCACATC AGTCTACACCACAAGGGTAAGGCATTTAATTTCAGGATTGAAGCGGGAGAGGAGAGCGAGTAA Protein sequence : MFQQYIRQCNQEVHKTLNAAIAELANAHQNVLTPEHILLGLLSLPGSEAAQLLQQILPDPEKSIEALTRAVYHDHENTPL KGDTTQVVAAQEVEEIFGIALSEAKRLGDAYIGTGSLLLALCDKRAGVTAIHLNNQGIKVGPAREALVKLRSGKTLDTPD AEGRSDPLDEYTQDLTEMARNNQLDPVIGREDEIGRVIQTLSRRKKNNPVLIGEPGVGKTVIVEGLAQRIANAEVPDTLR DKRLLSLDLAELVAGANMRGEFEERLKGVRDAVIEAKGQIILFIDELHTVVGAGAGAGGLDAPALLKSALGRGTLQLIGA DTLDEYHRYVEADKALERRFQPILVREPSIEETIDILNGLAGKYEGHHDIEYQPEALEAAARLSERYIADRHLPDKAVDL IDEAGADRHLHLLALSRPMKELERKRQALLSGKQKAYNEQAFERVANMQTEILKLEQQLSLQREQQTTDTASEDKAVNPE DIARVVARLTGIPAARLAESEVEKLSHMEDMLHKRIIGQQDAVSAVANAIRRNRTGINRSHRPIGSFLFLGPTGVGKTEL AKALAEFMLDDESRIVRLDMSEYMERHEVSKMIGAPPGYIGYGEGGQLTEKVRRNPYTIILLDEMEKAHPDVFNMLLQIL EDGRLTDAQGRTISFRNTLLIGTSNLGSESLISDRTPVGFIYSEDPDYEAARRTVMNEVKKFFKPEFLNRLDEVIVFHYL TQEDVLKIAKLLISSLCKQMKDNDITLHIDADVIERVAQDGFEPAYGARPLRREIEKQIENPIASLIVNNKNITGSEIHI SLHHKGKAFNFRIEAGEESE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-152 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ssed_3573 | YP_001475305.1 | chaperone endopeptidase Clp ATP-binding chain B,ClpB | VFG0080 | Protein | 4e-142 | 50 |
| Ssed_3573 | YP_001475305.1 | chaperone endopeptidase Clp ATP-binding chain B,ClpB | VFG0079 | Protein | 8e-168 | 46 |
