|
Name : Ssed_0329 (Ssed_0329) Accession : YP_001472070.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Resistance Product : ATP-dependent DNA helicase RecG Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1200 EC number : - Position : 380531 - 382606 bp Length : 2076 bp Strand : - Note : catalyzes branch migration in Holliday junction intermediates DNA sequence : GTGAATAGACTCGACCTTGTTCCCGTAACTGAGCTTAAAGGCGTTGCCAAGAAGATGGCCGAACGCTTGGCTAAGCTCGG CATTCATACGGTACAGGATCTGCTGTTTCACCTGCCCCTGCGTTACGAAGATCGCACCCAGATCTATCCCATCGCCTCAC TTTATCCTGGTAACTACGGTACAATCGAAGCCGTCATTCAATCCAGCCAGATTATTCAGGGCCGCAAGCGCATGCTGACC TGTACCGTGAGAGATGACACCGGCAGCCTCACCCTCAGATTCTTCAACTTCTCTGTCGCACAAAAAAATGGATTAGAGAA TGGATTAACCATTCGCGCCTATGGCGAAATTCGCCGTGGAAAACATCAGGCAGAGATCATTCATCCGGAATATAAGCTGG TACAGACCAATAGCGACCTTCCCTTGAGCGATACCCTCACGCCAGTCTATCCGACAACCGAAGGCCTCAAACAAGCCAGC TGGATAAAGCTGACGGAGCAAGCCTTAGCCCTGCTCGAAGAGGGAGGTCTGCAGGAGTTGATACCGCCGGAGCTTCAGCC CAATAACTTGAGCTTAAAAGCTGCTTTAATGCTGTTGCATCGACCTCATAACGGCGTCAACCTATTTGAACTCGAACAAG GCACTCACCCGGCGCAACAGAGGTTAATTCAAGAGGAGTTGCTGGCCCATAACCTAAGTATGTTGAAGCTGCGTCAACGC AGTAATCGGGACAAGGCCGTCTTAATGCCTGCATCGGGGCAACTGCTTAATCCATTTTTGAAATCGCTTCCCTTTAAGCC AACCGGAGCCCAACAAAGAGTCGGAGCAGATATCTCGACGGATCTGGAGAAGCCATTTCCTATGATGCGTCTCGTTCAGG GCGATGTTGGCTCAGGAAAAACCATAGTCGCCGCCTTGGCCGCCCTGCAGGCGATTGAAAATGGTTACCAGGTCGCCATG ATGGCTCCGACCGAGCTCCTTGCGGAGCAACATGCCGAGAACTTTACTCAATGGTTTGAGCCCCTGGGACTCAAAGTTGG CTGGTTGGCAGGAAAATTAAAAGGAAAGGCGAGAACACAATCTCTGATGGATATTGAGAGTGGTGAAGCCAATATGGTGA TAGGTACTCACGCCATCTTTCAAGAGAAGGTCACCTTTAATAAACTGGCCTTGATCATCATAGATGAACAACACAGATTT GGCGTTCATCAACGTTTAGGACTCAGGGAGAAAGGGATAGCCCAAGGGTTCCATCCCCATCAGTTGATCATGACCGCAAC CCCCATTCCACGAACATTGGCAATGACGGCATATGCAGACTTAGATACTTCGGTGATTGATGAGCTGCCACCCGGGCGAA CGCCGGTTGCTACCGTGGCCGTGTCGGACTCGAGGCGCAACGAAGTGATCGAAAGAGTCAGACAAGCCGCCACTAACGAT GGCAGACAGGCTTATTGGGTCTGCACCTTAATTGAAGAGTCAGAGGTACTCGAGTGCCAAGCCGCTGAAGATACCGCCGA AGAGCTTAGGCTCATGCTCACAGAGCTCAAGGTAGGCTTGGTTCACGGCCGCATGAAGTCCGCCGAGAAGCAAGCCATTA TGGCCGAGTTCAAGGCCGGCAACCTGAATCTGTTAGTCGCCACCACCGTCATCGAAGTGGGAGTCGATGTACCCAATGCC AGCTTGATGATCATCGAAAACCCTGAGCGATTAGGTTTAGCCCAACTGCACCAGCTTAGGGGCCGCGTCGGCCGGGGCGC GGTGGCCAGCCACTGCGTACTTATGTATAAAGCCCCACTCTCGCCCAGCGCCACCAAGCGATTAGGTGTGCTCAGAGACA GTAACGATGGCTTTATCATTGCCCAAAAAGATCTTGAGATCAGAGGTCCCGGTGAGGTGCTAGGCACTAAGCAAACAGGA ATTGCCGATATGAAAATCGCCGATCTCATCCGAGATCAGGCCCTTATTCCTCATATTCAAAAACTGGCCGTTCACCTCAT GCAGCAAGCGCCGGACAATGTCGATGGTATTGTGCAGCGCTGGCTAGGCGATCGAGAGCAGTTTGTGCAGGCATAA Protein sequence : MNRLDLVPVTELKGVAKKMAERLAKLGIHTVQDLLFHLPLRYEDRTQIYPIASLYPGNYGTIEAVIQSSQIIQGRKRMLT CTVRDDTGSLTLRFFNFSVAQKNGLENGLTIRAYGEIRRGKHQAEIIHPEYKLVQTNSDLPLSDTLTPVYPTTEGLKQAS WIKLTEQALALLEEGGLQELIPPELQPNNLSLKAALMLLHRPHNGVNLFELEQGTHPAQQRLIQEELLAHNLSMLKLRQR SNRDKAVLMPASGQLLNPFLKSLPFKPTGAQQRVGADISTDLEKPFPMMRLVQGDVGSGKTIVAALAALQAIENGYQVAM MAPTELLAEQHAENFTQWFEPLGLKVGWLAGKLKGKARTQSLMDIESGEANMVIGTHAIFQEKVTFNKLALIIIDEQHRF GVHQRLGLREKGIAQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVATVAVSDSRRNEVIERVRQAATND GRQAYWVCTLIEESEVLECQAAEDTAEELRLMLTELKVGLVHGRMKSAEKQAIMAEFKAGNLNLLVATTVIEVGVDVPNA SLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLMYKAPLSPSATKRLGVLRDSNDGFIIAQKDLEIRGPGEVLGTKQTG IADMKIADLIRDQALIPHIQKLAVHLMQQAPDNVDGIVQRWLGDREQFVQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| recG | CAJ77039.1 | ATP-dependent DNA helicase | Not tested | AbaR1 | Protein | 1e-100 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ssed_0329 | YP_001472070.1 | ATP-dependent DNA helicase RecG | BAC0356 | Protein | 0.0 | 58 |
