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Name : Ssed_3029 (Ssed_3029) Accession : YP_001474761.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3659953 - 3661605 bp Length : 1653 bp Strand : - Note : KEGG: sat:SYN_00458 general secretion pathway protein E DNA sequence : ATGAATATTGAAACACTACTGACGCAAGACTTCGCCGTATCAACAGTCGATATTGAAAAAGCAATTGCTTATCAAAAACG TGCTAATGGTCGCCTTGAAAAAATTCTTGTTAATATGGGAGCCTTGTCTGAAGAGGTACTACCGCGCCTTTATAGCAAGC TTTTACAATTGCCCTTGGTCGATATCAACGCTTTGCAAGACTGGCAAGCGCCAGTTTGGGAAGAAAAAGTCGACCTTTCA AAATTAGTTGAACATGGTTGGTACCCACTTCAGCAGACTAAAGGTGTTTGGACTATTGCGGTTCAGGACCCACTTAACTT TGATATCATGCAACTGTTAGAGTTTTATCAAATTCAGTTTGAACTGCAGGTACTCGATGATGAAACGACTACGGTATTAG TCGGTCATTATCAAGATGCAGAGTTACAAACCGCTGATAATGAACTATCTACCGATGAAGAGGAAAGGTTAAAGGAGTTA GCTACAGAAGCACCGACAGTTAACCTTTTAAATTCTTTGATTGGTAGAGCATTAAAGGCTGGTGCTTCAGATATGCATCT GGAACCATACCAAGAGAAGTATCGAATTCGATTCCGTATCGATGGGGTACTGCAAGATATCGAGATGCTCCCGGCAAAGA TGCGTCTACCTATAGCATCACGTCTGAAAATTTTGTCAGGTATGGATATCGCTGAAAAGCGAAAGCCTCAAGATGGCAAA ATCGAAATGAAGATCGCCTCTGAAGAGTTTGATATTCGAGTATCGGCCTTACCATTGAACGATGGCGAGAGTATTGTGAT GCGTTTTCTGCGTAAAGAAGCCATTAAGTACGATATGGATGTGCTCGGTCTATCCGGTGATATCCGTGAGCTGATTGAGG AAGATCTTAAAACCACGGCGGGTGTTATTCTGCTAACCGGCCCAACCGGTAGTGGTAAAACGACAAGTTTATATACCTTC CTCAACTCCATTAATAATAGTGACGTAAAAATTATTACCCTCGAAGATCCAGTCGAGTATCAACTGGAAGGGGTTAACCA GGTTCAGGTTCAGTCTGAAATCGGCTTCGATTTCTCAGCCGGCCTTCGAAGCATAGTCAGGCAAGATCCCGATGTGATCA TGTTAGGTGAAATTCGTGACTCAGAAACTGCTCAAATCGCCATGCAGTCTGCACTCACCGGACACCTGGTATTCAGTACT GTTCATACAAATGATGCGGCCAGTGCCTATACTCGCTTAATTGACTTGGGTGCTGAAGAGTTTCTACTTAATGCGGCGAT AACCTCTGTTATTGCGCAACGTTTGGCTCGAAAGCTGTGTAAGCATTGTTCGCTACCTCATCCCGATGCAGATAAAATAA TTGAAAAGTATCAGTTAAGACCTTTAGCAGATCAGTGTGGAGTCGAAATAAACCTCCATATTCCAAATGGGTGTGAGCAC TGTAATGAAAGTGGCTATAGCGGCCGAATTGCGATTGTTGAATACCTTCGCTGTGATGACGAGATAAAAATGCTACCGAA AGATAAACATTTTCCTATCGTTGCCCGCGAAACTGCAAAGAAAAGGGGTTATCGAAACTTGCTAGAAGATGGGCTTTATA AGGCCATGATAGGTATCACTTCAGTAGATGAAGTGCTTCGGGTTGCCGGATAA Protein sequence : MNIETLLTQDFAVSTVDIEKAIAYQKRANGRLEKILVNMGALSEEVLPRLYSKLLQLPLVDINALQDWQAPVWEEKVDLS KLVEHGWYPLQQTKGVWTIAVQDPLNFDIMQLLEFYQIQFELQVLDDETTTVLVGHYQDAELQTADNELSTDEEERLKEL ATEAPTVNLLNSLIGRALKAGASDMHLEPYQEKYRIRFRIDGVLQDIEMLPAKMRLPIASRLKILSGMDIAEKRKPQDGK IEMKIASEEFDIRVSALPLNDGESIVMRFLRKEAIKYDMDVLGLSGDIRELIEEDLKTTAGVILLTGPTGSGKTTSLYTF LNSINNSDVKIITLEDPVEYQLEGVNQVQVQSEIGFDFSAGLRSIVRQDPDVIMLGEIRDSETAQIAMQSALTGHLVFST VHTNDAASAYTRLIDLGAEEFLLNAAITSVIAQRLARKLCKHCSLPHPDADKIIEKYQLRPLADQCGVEINLHIPNGCEH CNESGYSGRIAIVEYLRCDDEIKMLPKDKHFPIVARETAKKRGYRNLLEDGLYKAMIGITSVDEVLRVAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-74 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-75 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ssed_3029 | YP_001474761.1 | general secretion pathway protein E | VFG0112 | Protein | 3e-81 | 46 |
| Ssed_3029 | YP_001474761.1 | general secretion pathway protein E | VFG1876 | Protein | 3e-79 | 44 |
| Ssed_3029 | YP_001474761.1 | general secretion pathway protein E | VFG2048 | Protein | 3e-74 | 43 |
| Ssed_3029 | YP_001474761.1 | general secretion pathway protein E | VFG0182 | Protein | 6e-82 | 41 |
| Ssed_3029 | YP_001474761.1 | general secretion pathway protein E | VFG1880 | Protein | 4e-70 | 41 |
