Gene Information

Name : Ssed_2830 (Ssed_2830)
Accession : YP_001474565.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3420382 - 3421077 bp
Length : 696 bp
Strand : -
Note : KEGG: sbl:Sbal_2403 lipoprotein releasing system, ATP-binding protein

DNA sequence : 
ATGCAAGAGCTACTGTTAGAAGTCAAAGGGGTGAGTAAAAGGTATCACGAAGGGAGTGTCGATACTCAAGTGCTCAACTC
TGTAGACCTGCAAGTGTTCAAGGGAGAACAGCTCGCTATCGTAGGCACGTCAGGTTCGGGTAAGAGTACTTTACTGCATA
TCATGGGGACGTTAGACAGCCCAACGAGTGGCAGCGTGAACATGTTAGGCGAGGATCTATATGCTCTTACGGCTCGCCGT
CAGTCAGCTATCCGTAATCAGGATTTAGGCTTTATCTATCAGTTTCATCACCTGCTCCCTGAATTTACCGCCCTGGAAAA
TGTCTCTATGCCAGCCCTGATACAGGGAAGAAACAAGAAAGAGGTCGAGTCTGAAGCTAAGGCCTTGCTTGAGAGGGTGG
GGCTGGGGCATCGATTAGCACATACCCCATCAGAGATGTCCGGTGGTGAGCGGCAGCGTACGGCTATTGCCAGAGCATTG
ATTAACAAGCCTAAGTTGGTACTCGCTGACGAGCCGACCGGTAATCTGGATGCCAGTAGCGGCGAAGCCGTTTATGAACT
GATTCAAGAGCTCGCCACCCAATTAGGTACGGCTTTTGTGGTGGTGACTCATGATACCAAGCTTGCAGCGCGGATGGACA
GGCAGGTCCAGATGAAGGATGGTGTTTTGCTCAACGGTGAAGGAATATCTTCATGA

Protein sequence : 
MQELLLEVKGVSKRYHEGSVDTQVLNSVDLQVFKGEQLAIVGTSGSGKSTLLHIMGTLDSPTSGSVNMLGEDLYALTARR
QSAIRNQDLGFIYQFHHLLPEFTALENVSMPALIQGRNKKEVESEAKALLERVGLGHRLAHTPSEMSGGERQRTAIARAL
INKPKLVLADEPTGNLDASSGEAVYELIQELATQLGTAFVVVTHDTKLAARMDRQVQMKDGVLLNGEGISS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-32 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-32 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_2830 YP_001474565.1 lipoprotein releasing system, ATP-binding protein CP001581.1.gene798.p Protein 8e-38 44
Ssed_2830 YP_001474565.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 2e-39 42
Ssed_2830 YP_001474565.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 3e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_2830 YP_001474565.1 lipoprotein releasing system, ATP-binding protein VFG2059 Protein 8e-16 41