Gene Information

Name : Ssed_2740 (Ssed_2740)
Accession : YP_001474475.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Resistance
Product : macrolide efflux ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3310562 - 3311248 bp
Length : 687 bp
Strand : -
Note : KEGG: saz:Sama_1468 macrolide efflux ABC transporter, ATP-binding protein

DNA sequence : 
ATGATAAAAGTGAGCGGATTAAAAAAAAAATACCGGATGGGAGAGACCTCTGTTTTCGCCCTCAGGGGGGTAGATTTTAC
CATCAATGAAAATGAGTTTGTCGCGATTATGGGGCCCTCAGGCTCCGGCAAATCGACACTGATGAATATCATAGGTTGTT
TGGATAAACCCAGTGAAGGGAGTTATCAGCTTAATCAACAAGAGGTCGCAAGCTTAGACGATGATGCCCTGTCGGCAGTG
CGTAATAAGGAGATAGGCTTCGTCTTTCAAAGTTTTCATCTTTTACCCAGGATGACCGCACTGCAAAATGTCTTGTTGCC
ACTGCGTTTTTCTAACCCTCCAAATGATGACAGAACCTATGCCAGTGAACTATTAACACGGGTGGGACTCGGTACCAGGC
AAGAGCACCGCCCAAACCAGCTTTCCGGTGGGCAAAGGCAGCGAGTCGCCATCGCACGTTCGTTAGTCAATCGCCCCACA
ATCCTACTCGCAGATGAGCCGACCGGGGCGTTAGACAGCAAGACATCGGTTGAGATCATGGCACTGTTTACCGAGCTGCA
TAAGGCCGGCCAGACCATTATCTTAGTGACTCATGAAGAGGAGGTCGCAGCCTATGCGCAGCGGGTGATACGTATGCGTG
ATGGAAATATTGTTGAGATTGAGCAGCGAGGTGAGTATGCGGCTTAA

Protein sequence : 
MIKVSGLKKKYRMGETSVFALRGVDFTINENEFVAIMGPSGSGKSTLMNIIGCLDKPSEGSYQLNQQEVASLDDDALSAV
RNKEIGFVFQSFHLLPRMTALQNVLLPLRFSNPPNDDRTYASELLTRVGLGTRQEHRPNQLSGGQRQRVAIARSLVNRPT
ILLADEPTGALDSKTSVEIMALFTELHKAGQTIILVTHEEEVAAYAQRVIRMRDGNIVEIEQRGEYAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-35 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_2740 YP_001474475.1 macrolide efflux ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-56 56
Ssed_2740 YP_001474475.1 macrolide efflux ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 5e-46 49
Ssed_2740 YP_001474475.1 macrolide efflux ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 6e-44 44
Ssed_2740 YP_001474475.1 macrolide efflux ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-43 42