Gene Information

Name : Ssed_2562 (Ssed_2562)
Accession : YP_001474297.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : universal stress protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0589
EC number : -
Position : 3110980 - 3111825 bp
Length : 846 bp
Strand : -
Note : KEGG: vfi:VFA1051 universal stress protein family

DNA sequence :
ATGAAGAATATCGTCGCTTGTATAGATGGCTCAAAATTGACTCTGGCAACCTGCGAAGCCAGTGCTTGGGTTGCACAGAA
GGTTAACGCCCCCCTTATCTTACTGCATGTACTCGATAAAACCACGAGACCTGTGGTGAGTGAATTGTCAGGGCAGATAG
GTTTGGGGACTCAAGAGGAACTCCTCAATGAGCTGGTGGAACTCGATGAAACCCGAAGCCGAGTCGCCCTTAAGCATGGT
AAGCAATTGCTTGAAGACGCTAGGAAGTGGGCTCGCGCCAAAGGTGTCGAAGAGATCAGCAAATTGCAACGTCATGGCAG
CCTGCAAGAGAGTCTAATCGATTTAGAAAGTGAGTTAAGGGTATTAGTGATTGGTAAGTCGGGTGAAGACCATAGCACCA
GTAAAAACATAGGCTCACAGCTCGAAAGTGTTATTCGCTCCATTAAAGCGCATACCTTAGTGGTCAGCGAAACGTTTGTG
ACGCCTAGCTCCTACATGATTGCCTTTGATGGCAGTGCAACCAGTGAGAAGCTGATTGAAAAGGCAATGAATACGCCTTT
ACTTGCCGGGCTTGAGTGTCATTTGGTTATGGTGGATGAAGCGGGCAATAAGAGCACGGCTTTCGATCAGGCGGCTATGC
GACTTCGAGAAGCCGGGCTTAGCGTGAATGAGAATATTCTGTCCGGGCGCGTCGATGAGGCGCTGCTTAATTACCAGCAA
GAGCAGCAACTGGACATGATTGTGATGGGGGCTTTCGGCCACTCAAAACTGAGACAGTTCTTTGTCGGCAGCAATACGAC
CGAAGTGCTGGTTAAAAGTGCGGTTCCGCTACTGCTGATCCGTTAA

Protein sequence :
MKNIVACIDGSKLTLATCEASAWVAQKVNAPLILLHVLDKTTRPVVSELSGQIGLGTQEELLNELVELDETRSRVALKHG
KQLLEDARKWARAKGVEEISKLQRHGSLQESLIDLESELRVLVIGKSGEDHSTSKNIGSQLESVIRSIKAHTLVVSETFV
TPSSYMIAFDGSATSEKLIEKAMNTPLLAGLECHLVMVDEAGNKSTAFDQAAMRLREAGLSVNENILSGRVDEALLNYQQ
EQQLDMIVMGAFGHSKLRQFFVGSNTTEVLVKSAVPLLLIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ABTW07_3909 YP_005797157.1 universal stress protein Not tested AbaR4e Protein 7e-54 44
ABK1_0239 YP_005512811.1 Universal stress protein Not tested AbaR4d Protein 7e-54 44
uspA AFV47994.1 universal stress protein A Virulence delta-AbaR25 Protein 6e-54 44
uspA AEO37451.1 universal stress protein A Not tested AbaR4 Protein 7e-54 44
BJAB07104_00258 YP_008207723.1 Universal stress protein UspA-related nucleotide-binding protein Not tested AbaR25 Protein 7e-54 44
uspA AEQ20902.1 universal stress protein A Not tested Tn6166 Protein 7e-54 44
BJAB07104_00274 YP_008207739.1 Universal stress protein UspA-related nucleotide-binding protein Not tested AbaR25 Protein 7e-54 44
uspA AEZ06029.1 universal stress protein A Not tested Tn6167 Protein 7e-54 44
BJAB0868_00262 YP_008211588.1 Universal stress protein UspA-related nucleotide-binding protein Not tested AbaR26 Protein 7e-54 44
uspA AFH57199.1 universal stress protein Virulence AbaR4a Protein 6e-54 44
BJAB0868_00278 YP_008211604.1 Universal stress protein UspA-related nucleotide-binding protein Not tested AbaR26 Protein 7e-54 44
ABZJ_00238 YP_005524194.1 Universal stress protein Not tested AbaR22 Protein 7e-54 44
uspA AFV47946.1 universal stress protein A Virulence AbaR25 Protein 6e-54 44
ABZJ_00257 YP_005524213.1 Universal stress protein Not tested AbaR22 Protein 7e-54 44
uspA AFV47966.1 universal stress protein A Virulence AbaR25 Protein 6e-54 44
ABTW07_3868 YP_005797116.1 universal stress protein Not tested AbaR4e Protein 7e-54 44
uspA AFV47977.1 universal stress protein A Virulence delta-AbaR25 Protein 6e-54 44