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Name : Ssed_2424 (Ssed_2424) Accession : YP_001474161.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : - Position : 2945609 - 2946346 bp Length : 738 bp Strand : + Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : ATGAACGTAACTCTGTTAATCCCAGCTCGCTATGGCTCAAGCCGTTTCCCTGGCAAGCCTTTGGCGCCGATTAACGGTAA GCCAATGATCCAGCATGTTTATGAACGTGCATCTTTGGCAAAAGGCTTAACCGCTATCTACGTTGCAACCGATGATGACC GCATTAAAGACGCTGTCGAAGGATTCGGTGGGAAAGTAGTCATGACGAGTCCTGACGCCGCTTCTGGTACAGATCGTATC GAAGATGCCATTACGCAATTAGGCCTGAAAGATGATGATCTTGTGGTTAACCTGCAAGGCGATCAGCCCTTAATCGACCC CATCTCTATCGAGCAGATAATCAGCCTGTTTGAACGCCATCCAGGAGAATTTGGAATGGCAACCTTAGGATTTGAGATCA CTGAAAAATGTGAACTCGACGATCCTAAGCACGTTAAAATGGTATTCGATAACGAGTTTAATGCACTCTATTTTTCTCGT GCACGTATCCCGTTCGGCAGAGATACCAACGACTATCCTGTTTATAAGCATTTAGGTGTCTACGCTTACACCAGAAGTTT TATCTCTACATTTGCTAAGTTACCCCTCGGACGTTTAGAAGATTTAGAAAAACTTGAGCAACTCAGAGCGCTCGAACATG GCTATAAAATCAAGGTCGCTATCAGTGCTTTTGATTCTCCGGAAGTTGATACCCCCGAAGATATTCGAGTCTGTGAGTCT CGTTTAGCGGTCGATTAA Protein sequence : MNVTLLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTAIYVATDDDRIKDAVEGFGGKVVMTSPDAASGTDRI EDAITQLGLKDDDLVVNLQGDQPLIDPISIEQIISLFERHPGEFGMATLGFEITEKCELDDPKHVKMVFDNEFNALYFSR ARIPFGRDTNDYPVYKHLGVYAYTRSFISTFAKLPLGRLEDLEKLEQLRALEHGYKIKVAISAFDSPEVDTPEDIRVCES RLAVD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 8e-42 | 44 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 8e-42 | 44 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 1e-41 | 44 |
