Gene Information

Name : Ssed_2424 (Ssed_2424)
Accession : YP_001474161.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : -
Position : 2945609 - 2946346 bp
Length : 738 bp
Strand : +
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence :
ATGAACGTAACTCTGTTAATCCCAGCTCGCTATGGCTCAAGCCGTTTCCCTGGCAAGCCTTTGGCGCCGATTAACGGTAA
GCCAATGATCCAGCATGTTTATGAACGTGCATCTTTGGCAAAAGGCTTAACCGCTATCTACGTTGCAACCGATGATGACC
GCATTAAAGACGCTGTCGAAGGATTCGGTGGGAAAGTAGTCATGACGAGTCCTGACGCCGCTTCTGGTACAGATCGTATC
GAAGATGCCATTACGCAATTAGGCCTGAAAGATGATGATCTTGTGGTTAACCTGCAAGGCGATCAGCCCTTAATCGACCC
CATCTCTATCGAGCAGATAATCAGCCTGTTTGAACGCCATCCAGGAGAATTTGGAATGGCAACCTTAGGATTTGAGATCA
CTGAAAAATGTGAACTCGACGATCCTAAGCACGTTAAAATGGTATTCGATAACGAGTTTAATGCACTCTATTTTTCTCGT
GCACGTATCCCGTTCGGCAGAGATACCAACGACTATCCTGTTTATAAGCATTTAGGTGTCTACGCTTACACCAGAAGTTT
TATCTCTACATTTGCTAAGTTACCCCTCGGACGTTTAGAAGATTTAGAAAAACTTGAGCAACTCAGAGCGCTCGAACATG
GCTATAAAATCAAGGTCGCTATCAGTGCTTTTGATTCTCCGGAAGTTGATACCCCCGAAGATATTCGAGTCTGTGAGTCT
CGTTTAGCGGTCGATTAA

Protein sequence :
MNVTLLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTAIYVATDDDRIKDAVEGFGGKVVMTSPDAASGTDRI
EDAITQLGLKDDDLVVNLQGDQPLIDPISIEQIISLFERHPGEFGMATLGFEITEKCELDDPKHVKMVFDNEFNALYFSR
ARIPFGRDTNDYPVYKHLGVYAYTRSFISTFAKLPLGRLEDLEKLEQLRALEHGYKIKVAISAFDSPEVDTPEDIRVCES
RLAVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 1e-41 44
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 8e-42 44
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 8e-42 44