Gene Information

Name : Ssed_2340 (Ssed_2340)
Accession : YP_001474077.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Unknown
Product : aminotransferase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0436
EC number : -
Position : 2837310 - 2838524 bp
Length : 1215 bp
Strand : +
Note : broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor

DNA sequence :
ATGCGTCCAATTATAAAATCAAATAAGCTAGATACCGTCTGTTATGACATTCGAGGGCCTGTGCATAAAGAGGCGCGCCA
TCTCGAAGACGAAGGCCATAGAATTTTAAAGCTTAATATCGGTAATCCGGCTCCCTTTGGTTTTGAAGCACCGGAGGAGA
TTGTCCGTGATGTCATCTTAAATCTTCCCAGCGCGCAGGGGTATTGTGAGTCGAAAGGACTTTTCTCTGCCCGTAAGGCC
ATAGTGCAGCACTATCAATCGCAGGGGATCTTTGGTGTCGATATTGAAGATGTCTATATTGGTAATGGCGTATCCGAGCT
TATTGTGATGGCGATGCAGGGACTGTTAAATACCGATGACGAGGTGCTCATCCCCTCACCCGATTACCCCTTATGGACAG
CTGCCGTTCACCTGTCAGGCGGCAAGGCACAACATTACCGCTGTGATGAGGAATCTGATTGGTTTCCCGATCTGGACGAT
ATCAAGAGTAAGATCACGCCTCGCACCCGGGCTTTAGTACTCATCAACCCCAATAACCCAACGGGCGCGGTTTACTCCAG
AGACCTACTGCTTGAAGCCGTCGAGATCTGTCGTCAGCATGATCTGATCCTGTTCGCAGATGAGATTTACGACAAGATAC
TTTACGATGAAGCTCAGCATATTCCTGCTGCCAGCCTCTCAGATGACATCTTAACCGTGACATTCAATGGCCTGTCCAAA
TCATACCGTGCCGCTGGCTTTCGTGTCGGCTGGATGATGCTATCGGGTAACTTAAAAGATGCTAAGAGTTATATCGAAGG
CTTAGATATGCTGGCTTCGATGCGACTGTGTTCGAACGTGCCGAATCAACACGCCATTCAGACCGCATTGGGAGGTTATC
AGAGTATCAATGAGCTGCTTATCGATGACGGCCGTTTGAAAGTACAGCGCGATACCTGCGTTGAATTACTCAACCAAATC
CCGGGCATAAGTGTCAAATGTCCCAAAGGGGCCATGTACGCTTTCCCTAAGCTCGATGCTAAGAAATTTAACATCCGTGA
TGACGAACGTTTGGTTCTCGATCTTCTGAAACAGAAAAAAATTCTTCTGGTACAAGGCACCGCCTTCAACTGGCCAGAAC
CTGACCATCTCAGAGTCGTGTTTTTACCTCATAAAGAGGAACTTGAAAAAGCATTAATCGAGTTCGGTGAGTTTATGGAT
GGCTACAGGCAATAA

Protein sequence :
MRPIIKSNKLDTVCYDIRGPVHKEARHLEDEGHRILKLNIGNPAPFGFEAPEEIVRDVILNLPSAQGYCESKGLFSARKA
IVQHYQSQGIFGVDIEDVYIGNGVSELIVMAMQGLLNTDDEVLIPSPDYPLWTAAVHLSGGKAQHYRCDEESDWFPDLDD
IKSKITPRTRALVLINPNNPTGAVYSRDLLLEAVEICRQHDLILFADEIYDKILYDEAQHIPAASLSDDILTVTFNGLSK
SYRAAGFRVGWMMLSGNLKDAKSYIEGLDMLASMRLCSNVPNQHAIQTALGGYQSINELLIDDGRLKVQRDTCVELLNQI
PGISVKCPKGAMYAFPKLDAKKFNIRDDERLVLDLLKQKKILLVQGTAFNWPEPDHLRVVFLPHKEELEKALIEFGEFMD
GYRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aspC YP_005682179.1 Aminotransferase AlaT Not tested PiCp 7 Protein 8e-114 57
aspC YP_005684271.1 Aminotransferase AlaT Not tested PiCp 7 Protein 8e-114 57
aspC YP_003784329.1 aspartate aminotransferase Not tested PiCp 7 Protein 8e-114 57
aspC YP_005686363.1 Aminotransferase AlaT Not tested PiCp 7 Protein 8e-114 57