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Name : Ssed_2013 (Ssed_2013) Accession : YP_001473750.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Unknown Product : thiamine biosynthesis protein ThiC Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0422 EC number : - Position : 2436682 - 2438640 bp Length : 1959 bp Strand : + Note : required for the synthesis of the hydromethylpyrimidine moiety of thiamine DNA sequence : ATGTCAACACGTCGTGAAACCCGAGCTCAAGCTCAACAATTTATTGATAATCTAAAACCACTTCAACATCCAAATTCTGA GAAAGTTTACTTAGTCGGTAGCCGTGATGATATTCGGGTAGGTATGCGTCAAATACACCAATCAGAGACCATGATTGGCG GCACCGAATCTCATCCCGTTTTAGAATCAAATCCGCCATTGAAAGTGTACGATTGTGCCGGTCCATATTCCGATCCCAAC GCCAAGATTAACGTCCGTGAAGGTCTGGATAAGTTCAGGGCAAATTGGATCCTTGAGCGCAATGATACCGAGCAATTGAT CGCTGCCAGTTCTGGTTTTACACAGCAAAGGTTAGCCGATTACGGACTCGACCATCTGCGTTTCGACTCGCTTCTTTCAC CCAGAAAGGCCAAACAAGGTCAGTGTGTGACTCAACTTCATTATGCCAGACAGGGGATAGTTACCCCGGAAATGGAGTAC ATTGCCATCAGAGAGAATATGGCTTTGAGTGAAGTGACCGATGAAGCGTTAACTCAGAAAGCAGAAGGTGAAAGTTTCGG CGCGGCGATAAGTCAGCCTATTACCCCTGAGTTTGTCCGGCAAGAGGTGGCACGGGGACGTGCCATTATTCCGCTGAATA TTAACCATCCCGAAGCCGAACCTATGATTATCGGTCGTAACTTTCTGGTTAAAGTGAACGCCAATATAGGTAACTCTGCG GTGACCTCTTCAATCGAAGAGGAAGTTGAAAAACTGGTTTGGTCGACGCGTTGGGGAGCCGATACGGTAATGGATCTATC GACGGGTCGATATATTCATGAAACAAGGGAATGGATCATACGAAACTCGCCAGTGCCTATTGGTACCGTGCCCATCTACC AAGCTCTGGAGAAGGTCAATGGCGTGGCGGAAGACCTCACATGGGAGATATTCAGAGATACTCTGCTTGAACAGGCAGAG CAAGGCGTCGATTACTTTACTATCCACGCAGGTGTGTTGCTTCGCTACGTCCCGATGACGGCCAAGCGTTTGACCGGCAT CGTCTCACGGGGCGGATCAATTATGGCAAAGTGGTGTCTCTCTCACCATCTTGAAAACTTCTTGTATGAACACTTCCGGG ATATCTGTGAGCTTTGCGCCGCCTATGACGTTTCATTGTCACTCGGTGATGGAATGCGACCGGGATCAATTGCCGATGCT AACGATGAAGCACAATTTTCTGAACTCGAAACCTTAGGTGAGTTAGTTAAGATTGCCTGGGAGTACGATGTGCAAACGAT CATCGAGGGGCCGGGTCATATCCCCATGAATCTGATTAAAGAGAACATGGATAAGCAGCTTGAGGTGTGTGATGAAGCGC CATTTTATACCTTAGGCCCTCAGACTACCGATATCGCACCGGGTTATGATCATTTCACTTCGGGGATCGGCGCGGCAATG ATTGCCTGGTATGGCTGTGCCATGCTCTGCTATGTGACGCCAAAAGAGCACTTAGGTTTACCGAACAAGGAAGACGTCAA GCAAGGCTTGATCACCTATAAGATTGCCGCTCATGCCGGTGATGTGGCTAAGGGTCATCCGACAGCACAAATTCGAGACA ATGCCCTGTCCAAGGCAAGGTTTGAGTTTCGCTGGGAAGATCAATATAACTTAGGACTGGATCCTGACACCGCCAGAGCC TATCACGATGAATCGCTTCCGCAGGAATCGGCGAAAGTTGCTCATTTCTGCTCCATGTGCGGGCCCAAGTTCTGTTCGAT GAAGATAAGCCAAGAGGTCAGAGAATATGCGGCGGCGCAAGAGGTTAAGCTGCATACAGACACGGAGTTTAAGGCTAAGA GTGTCAAAGAGTCGGGTATGGCTCAGATGTCTGCAGAATTTAAGGCTAAGGGGGCGGCGCTTTACCATGAAAGCGGCGCG TTGGTGGAAGATGTTGAACTTGTAGAAACCGAGGGCTAG Protein sequence : MSTRRETRAQAQQFIDNLKPLQHPNSEKVYLVGSRDDIRVGMRQIHQSETMIGGTESHPVLESNPPLKVYDCAGPYSDPN AKINVREGLDKFRANWILERNDTEQLIAASSGFTQQRLADYGLDHLRFDSLLSPRKAKQGQCVTQLHYARQGIVTPEMEY IAIRENMALSEVTDEALTQKAEGESFGAAISQPITPEFVRQEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSA VTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWIIRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTLLEQAE QGVDYFTIHAGVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHLENFLYEHFRDICELCAAYDVSLSLGDGMRPGSIADA NDEAQFSELETLGELVKIAWEYDVQTIIEGPGHIPMNLIKENMDKQLEVCDEAPFYTLGPQTTDIAPGYDHFTSGIGAAM IAWYGCAMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAGDVAKGHPTAQIRDNALSKARFEFRWEDQYNLGLDPDTARA YHDESLPQESAKVAHFCSMCGPKFCSMKISQEVREYAAAQEVKLHTDTEFKAKSVKESGMAQMSAEFKAKGAALYHESGA LVEDVELVETEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00317 | YP_008207782.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00321 | YP_008211647.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR26 | Protein | 0.0 | 70 |
| thiC | YP_001598318.1 | thiamine biosynthesis protein ThiC | Not tested | MDA | Protein | 0.0 | 67 |
