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Name : Ssed_0173 (Ssed_0173) Accession : YP_001471914.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Unknown Product : RNA-binding S1 domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 195536 - 197950 bp Length : 2415 bp Strand : + Note : KEGG: slo:Shew_3634 RNA binding S1 domain protein DNA sequence : GTGCTATCTTTGGCACCACTCAAATCTTTCTATCCAGGCACGACACAACTTCTTATGCAAATGACGCAAAATATTGCCCA AATCATCGCTCAGGAACTGAATGTTCGCGAACAACAAGTCACCTCTACTATCACCTTACTCGATGATGGTGCAACGGTAC CTTTCGTTGCGCGTTACCGAAAGGAGGCGACGGGAGGGTTGGATGATACTCAGTTGCGTACGTTAAATAGCAGGTTGAGT TACCTGCGTGATCTGAACGATAGAAGAGCGGTGATCCTATCGAGTATCGATACTCAGGGAAAACTGACCCCTGAATTGAA AAAAGCCTTGGTCGATGCCGACAGTAAGACGCGTTTAGAAGATCTTTACCTGCCTTACAAGCCTAAGCGTCGCACTAAGG GCCAGATAGCAATCGAAGCGGGCATCGAGCCTTTGGCTGATTATTTATTCGGTAACCGACAGGCAGATATTGAACTCGAA GCGGGTAAATTTATCAATGCAGAAGCGGGGTTTGCCGACAGTAAGTCCGTTCTCGATGGGGCGCGTTTCATTATCATGGA GCGTTTTGCTGAGGATGCCGCGCTGCTGCAAAAGGTAAGGCAACATCTTAGCCAAAACTCTGTGCTCGAGAGCAAGATGG TGAAGGGGAAAGAGAAAGAGGGCGCGAAATTCCGTGACTACTTTGAGCATACAGAGAAGCTAAGCAAGATACCGTCGCAT CGTGCATTGGCTATGCTACGCGGTCGAAATGAGGGAATGCTGAGTTTAAGCATGAATGCCGACCCGGACAATGAGTCTAA GCAAAGCAGTTACTGCGCCGTTATCATCGCCGATCACTTTAAGCTTAACCTGACCGATAGTGCGGTAGACCAGTGGCTGA AAACCGTAGTCACGGCAACCTGGCGTATCAAGATCGCACTACAGATGGAAACCGAGTTTCTCGCTAAGATGCGTGAACAG GCTGAATCTGAGGCAATCAACGTTTTCGCCAAGAACCTGGGCGATCTTCTGATGGCCGCTCCTGCAGGAGCCAAGGCCAC ATTAGGGCTAGATCCAGGCCTTAGAAGCGGTGTGAAGGTGGCTATCGTGAACAACACGGGTAAGCTGACGGCACATACGA CTATCTTCCCCCATGCTCCACAAAACCAATGGGACAAGTCTGTTCGCACCTTAGCGAACCTTGCCAAGATGCATAAGGTT GAGCTGATCGCGGTAGGTAATGGTACCGCTTCGAGGGAAACGGATAAGCTGGCGGGAGAGCTGATCGCCAGTGTGAAAGC CGAGCTACCTGGGTTAACTAAAATTATGGTGAGTGAGGCGGGAGCCTCGGTCTATTCGGCCTCTGAATTAGCGGCCAATG AATTTCCCGATCTTGATGTGTCTATTCGTGGCGCCGTGTCTATCGCCCGCCGTCTACAAGATCCGCTCGCCGAGCTGGTT AAGATCGAGCCTAAGTCGATCGGAGTCGGGCAGTATCAACATGATGTCAGTCAGAGCCAACTGTCTCAGTCTCTGGAAGG GGTAGTGGAAGACTGCGTTAACGGTGTTGGCGTCGATCTCAATATGGCTTCTGCGCCCTTGCTATCACAAGTTGCTGGTT TGAATAAGACATTGGCTAGAAATATTGTGACTTACCGAGATGAAAATGGTCAATTTAAACAGCGTAAGCAGCTACTTAAG GTTGCTCGTTTAGGCCCTAAAGCCTATGAGCAGGCGGCGGGGTTCCTGCGCATTGTCGATGGCGATAACCCGTTAGACGC TTCCTCTGTGCACCCGGAAGCCTATTCGCTGGTGGAATCCATTGCTAAGGCAAAAGATCAGGCCTTAGACACTTTAATGG GTAACAGTGAATTGCTACGTAGCCTGAAGGCTGAAGATTTCATTACCGAAAAATTTGGCCTGCCAACCGTCACAGATATT CTGACTGAACTCGACAAACCCGGGCGAGATCCACGTGGTGAGTTTAAGACCGCCACCTTTAAAGAGGGAGTCGAAGAGGT TAAAGATCTTAAACTCGATATGATCTTAGAGGGTGTGGTGACCAATGTGACTAACTTCGGTGCCTTCGTCGATGTTGGAG TTCACCAGGATGGATTGGTGCATATCTCTTCACTGACGGACAAGTTTGTCAGTGACCCTCACACCGTCGTTAAGGCGGGT GATGTAGTGAAGGTCAAGGTGATGCAGGTCGATGTCGAGCGCAAGCGTATCGGCCTTAGCATGCGTCTGGATGAGAAGGC CGCTGATATGCCTGCTGGTCGTTCTAACCAAAAATCTCAGACAGGGTCTAAGCCTGCTGCTAAATCGAATCAGCAAGGCA AAGGCAAGCCTCAGCATAGATCTCAGCCAAAACAGCAAGCCAATGCTGCCATGGGCAACGCTTTCGCCGATGCCTTTGCA AAATTGAAGAAGTAA Protein sequence : MLSLAPLKSFYPGTTQLLMQMTQNIAQIIAQELNVREQQVTSTITLLDDGATVPFVARYRKEATGGLDDTQLRTLNSRLS YLRDLNDRRAVILSSIDTQGKLTPELKKALVDADSKTRLEDLYLPYKPKRRTKGQIAIEAGIEPLADYLFGNRQADIELE AGKFINAEAGFADSKSVLDGARFIIMERFAEDAALLQKVRQHLSQNSVLESKMVKGKEKEGAKFRDYFEHTEKLSKIPSH RALAMLRGRNEGMLSLSMNADPDNESKQSSYCAVIIADHFKLNLTDSAVDQWLKTVVTATWRIKIALQMETEFLAKMREQ AESEAINVFAKNLGDLLMAAPAGAKATLGLDPGLRSGVKVAIVNNTGKLTAHTTIFPHAPQNQWDKSVRTLANLAKMHKV ELIAVGNGTASRETDKLAGELIASVKAELPGLTKIMVSEAGASVYSASELAANEFPDLDVSIRGAVSIARRLQDPLAELV KIEPKSIGVGQYQHDVSQSQLSQSLEGVVEDCVNGVGVDLNMASAPLLSQVAGLNKTLARNIVTYRDENGQFKQRKQLLK VARLGPKAYEQAAGFLRIVDGDNPLDASSVHPEAYSLVESIAKAKDQALDTLMGNSELLRSLKAEDFITEKFGLPTVTDI LTELDKPGRDPRGEFKTATFKEGVEEVKDLKLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTVVKAG DVVKVKVMQVDVERKRIGLSMRLDEKAADMPAGRSNQKSQTGSKPAAKSNQQGKGKPQHRSQPKQQANAAMGNAFADAFA KLKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 60 |
