Gene Information

Name : Ssed_1559 (Ssed_1559)
Accession : YP_001473298.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Resistance
Product : methionine gamma-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 1859954 - 1861132 bp
Length : 1179 bp
Strand : +
Note : KEGG: she:Shewmr4_2477 methionine gamma-lyase

DNA sequence : 
ATGCAGGATAAATGGAAGCCCGCCACGAAAGTGATACATGCAGGACACATCAAAGACAGCTCTGGAGCCTTAGTCTCGCC
TCTATGTCAGAGTGCCACCTTTGTCTTTGACAGTGCCGAGCAGGGGGCATCGAGATTTGCAGGCGATGAAGCGGGTTATA
TTTATACTCGTCTGGGAAACCCGACGACAGCCGAACTTGAGCGAAAGATGGCTGTTTTGGAGGGGGCTGAGGCCGCCACG
GCAACCGCGTCGGGCATGGCGGCGGTATCATCGGCTTTATTGGCTAATTTGAGCCATGGGGATCATCTCGTCGCCTCTAA
AGCCGTTTACGGTTGTACTTTCTCCTTGGTGACCAGCCAACTGGTAAAGTTTGGCATTCGAGTGACGCTGGTGGATTTTA
ATGATCTGAACGCGGTTGCTGATGCCATAACCTCTGACACTAAAGTCATATTCTGTGAAACCCCGGTCAACCCACACCTC
GATGTATTCGACCTCGATGGAATTGCAGAGATCGCGAAGCAACATGGATTGATCAGCATTGTCGATAATACCTTTATGAC
TCCGCTTCTTCAGCAACCACTGAGTCACGGTATCGATATCGTTATTCATAGTGCGACTAAATATTTGAACGGCCATGGTG
ATGTCATCGCCGGCATTATCTGTGGTTCTGATGAGCAGATTGAAAAGATTAAATATGAGACCTTGAAAGACTTAGGTGGA
GTTCTTTCCCCCCATGATGCCTGGCTGATCTTAAGGGGACTTAAGACATTAGATGTACGACTCGAGCGGCATTGTGATAA
TGCAGAGGTGATCGCGCAATATTTACTGAATCACAATAGGGTCACCAAGGTTTATTACCCGGGGATCAAGGGACATAGCG
GCCACCAATTCATAGGGCAGCAGATGAAAAGAGCCGGTGGAGTCATTGCCTTCGAGCTCGATGCCAGTTTGGAACAGAGC
ATCAAATTTATTAATGGCTTACACCTTTTTGCTATTGCCGTGAGTCTGGGTGATGCCGAATCACTTATCCAACATCCTGC
ATCCATGACGCATTCTCCATACTCAGATGAAGAGAGGGAGGCTGCGGGGATTGGCGCGAGTCTGTTAAGGATCTCCGTCG
GTCTGGAGTCGGTTGAAGATCTGATTGTCGACCTGGAGCAGGCTCTGTCACGAATTTAA

Protein sequence : 
MQDKWKPATKVIHAGHIKDSSGALVSPLCQSATFVFDSAEQGASRFAGDEAGYIYTRLGNPTTAELERKMAVLEGAEAAT
ATASGMAAVSSALLANLSHGDHLVASKAVYGCTFSLVTSQLVKFGIRVTLVDFNDLNAVADAITSDTKVIFCETPVNPHL
DVFDLDGIAEIAKQHGLISIVDNTFMTPLLQQPLSHGIDIVIHSATKYLNGHGDVIAGIICGSDEQIEKIKYETLKDLGG
VLSPHDAWLILRGLKTLDVRLERHCDNAEVIAQYLLNHNRVTKVYYPGIKGHSGHQFIGQQMKRAGGVIAFELDASLEQS
IKFINGLHLFAIAVSLGDAESLIQHPASMTHSPYSDEEREAAGIGASLLRISVGLESVEDLIVDLEQALSRI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-56 41
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 6e-58 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_1559 YP_001473298.1 methionine gamma-lyase BAC0207 Protein 1e-81 50