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Name : Ssed_1299 (Ssed_1299) Accession : YP_001473038.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1541354 - 1543933 bp Length : 2580 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGAATGCTATCGATACCCAAAATTTAGAAAAACACACACCTATGATGCGTCAATACCTGACGCTAAAAGCTGAACATCC GGAGATGCTGCTCTTTTATCGCATGGGTGATTTCTATGAACTTTTTTATGATGACGCTAAAAAGGCTTCTGAATTATTGG GGATCTCACTCACTGCCAGAGGAAAAAGTGGCGGCGATCCCATTCCTATGGCGGGCCTGCCTTATCATGCGGTTGAAGGA TATTTAGCCAAGCTGGTCCAACTCAGGGTGTCTGTCGCCATTTGCGAACAAGTGGGCGATCCGGCGACATCTAAGGGACC GGTTGAGAGAAAGGTCGTACGCCTTGTGACGCCCGGTACATTGACCGACGAGGCCCTGCTGCAAGAAAAACAGGATAACT TGCTCGCCGCCGTTTATCATGGCAAGAGCGGATATGGGTACGCCACCTTAGATATCAGCTCGGGTCGATTTGTCGTCGCA GAACTTGCCTCGACCGAGGCACTTGAAGCCGAGCTGCAACGGACTAACCCTGCCGAGCTACTCTATAGCGAAGATTTCTC TGAGATGGGATTAATCTCCGGTTTTAACGGTAAACGCAGACGTCCTGAATGGGAGTTTGATTTCGATACCAGCCAAAAAT TACTTCTGGATCAATTCGGCACAAAAGATCTCCGTGGTTTTGGCCTGGACAATGCGCGCCTCTCACTTCAAGCTGCCGGC TGTTTAATGCAGTACGTGAAAGACACGCAACGAACGGCATTGCCACATATTAATTCAATCGTTCGCTTCAACCAAAGTGA CAGTATCGTCCTTGATGCCGCAACCCGGCGTAACCTCGAACTCACGGTAAACCTCCAGGGCGGTCATGAAAATACCTTAG CCTCTGTACTGGATAATACGGCAACGCCTATGGGTAGCCGTATGCTTCAGCGCTGGATCCATGAGCCACTAAGAAACCAA CAGCAGATCGAGTCTCGTCAGAGTGCATTAACCGAGATATTAGACACTAATCTGTTCGAGACCCTCGAACCTCAGCTAAA AGCTTTGGGCGATGTCGAGCGGATCACCGCAAGGTTGGCCCTTCGTAGCGCAAGGCCAAGAGATTTTGCCCGCCTGAAGC AAGCCATATCCCTGTTACCCGAAATTCAGCAATCTCTTGCTAACTGCCAATCGGCTCACCTGCATCATCTGGCAAGAATG CTCGGCGAATTCCCCGATGAACTTGAGCTATTAGAGCGCGCGATTGTAGATAACCCTCCAATGCTTATCCGCGACGGTGG CGTACTTAAAGAGGGCTATAATGCCGAGCTGGATCAATGGCGAGCACTGAGTCAAGGCGCGACCGATTATCTGTCTGAGC TCGAAGCCAGAGAGAAAGAGCAAACCGGTATATCGACACTTAAGGTCGGCTATAACCGGGTCCATGGCTACTATATTGAG GTCAGCCGAAGAGAGTCTGATCTGGTTCCACTGAGCTATCAGCGCAGACAGACACTCAAAAATACTGAGCGCTACATCAT CGCAGAGCTTAAAGAGCATGAAGAGAAAGTGCTATCCAGTCAGGGAAAGGCGCTGGCACTCGAGAAACAGTTGTGGGAAC AACTCTTCGATCAGATACTGCCTAAGCTTCATGACTTACAACTATTTGCACAGGGCGCCGCCGAGCTCGATGTAATAAAT AACTTCGCCGAGCGTGCCGAAACATTAAATTACAGCTGCCCGACACTATCACAAAAATCCGGTATACATATAGAAGGCGG GCGTCACCCTGTTGTGGAACAGGTGAGCCAAACGCCATTTATTGCTAACCCGGTCACCTTGAATCCTGCACGAAAAATGT TAATCGTGACCGGACCGAATATGGGCGGTAAATCTACCTACATGCGCCAGGTAGCCTTAATTACTTTAATGACGCACATA GGTTGTTATGTACCCGCCCAGAGTGCAGTAATCGGTCCTGTTGACCGCATATTTACCCGTATCGGTGCAGCCGACGATCT TGCTTCGGGTCGTTCAACTTTTATGGTTGAGATGACTGAAACGGCAAATATTCTTCATAATGCCACCACGGAAAGTCTGG TACTGATGGATGAGATTGGTCGAGGAACCTCGACATATGATGGTCTCTCTCTGGCCTGGTCAGCTGCCGAATATTTAGCT CAGAAAATTGAAGCTATGACCCTATTTGCCACTCACTATTTCGAACTGACTCAACTTCCCGAGCTCATATCCAACGTTGA AAATGTGCACCTTGACGCTATCGAGCATGGTGACACTATTGTGTTTATGCATGCTGTTCAGGAAGGCGCTGCAAGTAAAA GTTATGGTTTGCAGGTTGCCGCACTGGCAGGGGTTCCAGGCAAGGTCATTACCGCCGCAAAGCATAAGCTACACCACTTA GAAAGTCGTGACACGAACAGCGCCGTAGACTCGATGACTACCTCAAATCAACAGAGTATGGTATTTGATGAACCAGTAAA TTCCGCCTTAAATGACGCATTAGATAAGATACATCCCGATGAATTGAGCCCAAGACAGGCACTCGATATCTTGTATGAGC TTAAGCGGTTAACGAGCTAA Protein sequence : MNAIDTQNLEKHTPMMRQYLTLKAEHPEMLLFYRMGDFYELFYDDAKKASELLGISLTARGKSGGDPIPMAGLPYHAVEG YLAKLVQLRVSVAICEQVGDPATSKGPVERKVVRLVTPGTLTDEALLQEKQDNLLAAVYHGKSGYGYATLDISSGRFVVA ELASTEALEAELQRTNPAELLYSEDFSEMGLISGFNGKRRRPEWEFDFDTSQKLLLDQFGTKDLRGFGLDNARLSLQAAG CLMQYVKDTQRTALPHINSIVRFNQSDSIVLDAATRRNLELTVNLQGGHENTLASVLDNTATPMGSRMLQRWIHEPLRNQ QQIESRQSALTEILDTNLFETLEPQLKALGDVERITARLALRSARPRDFARLKQAISLLPEIQQSLANCQSAHLHHLARM LGEFPDELELLERAIVDNPPMLIRDGGVLKEGYNAELDQWRALSQGATDYLSELEAREKEQTGISTLKVGYNRVHGYYIE VSRRESDLVPLSYQRRQTLKNTERYIIAELKEHEEKVLSSQGKALALEKQLWEQLFDQILPKLHDLQLFAQGAAELDVIN NFAERAETLNYSCPTLSQKSGIHIEGGRHPVVEQVSQTPFIANPVTLNPARKMLIVTGPNMGGKSTYMRQVALITLMTHI GCYVPAQSAVIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATTESLVLMDEIGRGTSTYDGLSLAWSAAEYLA QKIEAMTLFATHYFELTQLPELISNVENVHLDAIEHGDTIVFMHAVQEGAASKSYGLQVAALAGVPGKVITAAKHKLHHL ESRDTNSAVDSMTTSNQQSMVFDEPVNSALNDALDKIHPDELSPRQALDILYELKRLTS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ssed_1299 | YP_001473038.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 0.0 | 67 |
