Gene Information

Name : Ssed_0125 (Ssed_0125)
Accession : YP_001471866.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 138433 - 139866 bp
Length : 1434 bp
Strand : +
Note : KEGG: slo:Shew_3682 two component, sigma54 specific, transcriptional regulator, fis family

DNA sequence : 
ATGATGCTAGAATCACCATTAAATGAGTCAAAATGTCCTAAAGAAGACAATATGAGCCAAAATAAAAAAGATTTGAAACC
CCTTCCTTCCGCCGTATCTGTGCTTATTGTAGATGATGAGCCCGGTATGCGTAGCTTTCTGAAAAAGGCGCTCTCTAAAA
AATTCGCTCTGGTCGAGACCGCCTCCAGCGTCGAGGACGCAGAACAGTTAAGAAGTCGATGCCATTTTGACCTCTTGGTC
GTGGATATTCGTCTACCTGGTCGTTCCGGAATTGAATGGCATGAAGCATTAAATGATCAGGAGAGACGCTCGGACATCAT
CTTTATGACGGGTTATGCGGATATGGATGTTGCTATCAAGGCACTAAGAGCCGGAGCATCAGACTTTATCATGAAGCCAT
TTCATCTTGAGCAGATGATGAAAGCGGTCGATCGCTGTATCGAACGTCGTTTGCTCAAGCGTGAAAACTTGATGCTGCGT
CGTGAAGTCTCTATTGGCCAGTCCTCTACTATTATCGGTAGTAGCGATGCCATGCAAGAGGTGAAGCATGTCATCGAACG
TGTAGCGCCAACGAATGCCGTGATCTTAATTGAAGGCGAGTCGGGTACGGGTAAAGAGTTAGTCGCGAGACAATTGCATC
TGCTGAGTGGACGCCAAGGGCCTTTTGTTCCGGTTAATTGTGGTGCTATTGCGCCGGAACTTCTTGAGAGTGAGCTCTTT
GGTCATGCGGCCGGTGCCTTTACCGGAGCGAAGGGCAATCGTGAGGGCCTGTTTAGCTTTGCCTCCGGTGGCACAATCTT
TCTCGATGAGATCGGTGAGATGCCTCTTAAGATGCAGACGGCTCTACTTAGGGTTCTGGAGCAGAGAACGATCCGTCCCG
TCGGTAGTGAGAAAGAGACAAATATTGATGTCCGGGTATTGGCGGCAACAAACCGTAAGCTCGCGGAAGAGGTCGAAGAG
GGTAACTTCAGACGAGACCTTTATTACCGTTTGAATGTGTTAGATATCGTGATCCCTCCTCTCAGAGATAGGCCGGAAGA
TGTCGTTGAATTAACACATCACTTTACCAGGCAGTTGGCGTCTGAACTCGGTGTTAAAGAGGTCGTTTGGAGCCATGAAG
ATATGCTGAAATTACAACAGCATGAGTGGCCTGGAAATATCCGTGAACTGAGAAACATGATTGAGCGCTGTATCTTACTG
GGTAAGCCTCCTGCGGAGTATTGGAAGCAGCAGCCAAAATCTGACATGCCCAATGAATCGGGTTATCCATTAGATTGGGG
ACTAAAGGAGGTTGAAAAACATCACGTTACTCAAGTCGTCGACCTTCACAATGGCAATAAATCTGCCGCGGCGAGGGATC
TAGGGGTTTCGCGGAAAACTTTAGATAGGAAGTATAAAGAGTGGTTCGATACCGATAAACAAGAGGAGAGTTAA

Protein sequence : 
MMLESPLNESKCPKEDNMSQNKKDLKPLPSAVSVLIVDDEPGMRSFLKKALSKKFALVETASSVEDAEQLRSRCHFDLLV
VDIRLPGRSGIEWHEALNDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCIERRLLKRENLMLR
REVSIGQSSTIIGSSDAMQEVKHVIERVAPTNAVILIEGESGTGKELVARQLHLLSGRQGPFVPVNCGAIAPELLESELF
GHAAGAFTGAKGNREGLFSFASGGTIFLDEIGEMPLKMQTALLRVLEQRTIRPVGSEKETNIDVRVLAATNRKLAEEVEE
GNFRRDLYYRLNVLDIVIPPLRDRPEDVVELTHHFTRQLASELGVKEVVWSHEDMLKLQQHEWPGNIRELRNMIERCILL
GKPPAEYWKQQPKSDMPNESGYPLDWGLKEVEKHHVTQVVDLHNGNKSAAARDLGVSRKTLDRKYKEWFDTDKQEES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-61 41
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-61 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_0125 YP_001471866.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0089 Protein 2e-63 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_0125 YP_001471866.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1214 Protein 3e-65 42