Name : Ssed_1120 (Ssed_1120) Accession : YP_001472859.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Virulence Product : betaine aldehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : - Position : 1334393 - 1335856 bp Length : 1464 bp Strand : - Note : catalyzes the formation of betaine from betaine aldehyde DNA sequence : ATGTCGTTAGTTGTTTATCAAAATTATGTCCATGGACAGTCTCTCTCCAACGACACAGGTGAAACCTTTGAAGTCATTAA CCCCGCTACCGGAAAAGTCAGCTATTTAGTCGAGAGCGCCGATGCGAGCATTCAGAAAGCGGCCATAGCAAGTGCCAAGA GAGGTTTTGCCGTCTGGTCAAAAATGACCGCGATGGAACGCAGTCGCATCCTATTAAAAGCCGTCGCACTCCTCCGTGAG CAAAATGACGAGCTCGCCGCTATCGAGGTGCAAGATACAGGCAAACCTTGGCAGGAAGCCTCCGTGGTCGATGTCGTTAC CGGCGCAGACTCCATTGAGTTTTTCGCAGGCCTTGCCCCGAGTATCGAAGGCAACCAGCAACAAGTTGGCGATGATTTCT ATTACACCCGCCGCGAGCCGCTGGGTATTTGCGCTGGCATCGGTGCATGGAACTACCCGCTACAGATCGCCTGTTGGAAA TCTGCACCTGCATTAGCCTGCGGTAACGTGATGATCTTTAAACCATCGGAAGAGACGCCACTCGGCGCCATAAAACTGGC CGAAATATTGACTCAAGCAGGTGTGCCCGATGGCGTCTTTAATGTCGTCCAGGGAGATGGCCGTGTTGGCGCCTGGCTGA CCACCCATGATGATATCGCTAAAGTCTCATTCACCGGTGAAGTGGGTACGGGCAAGAAAGTGATGGCCGCCGCTGCGGGC TCACTGAAAGAGGTCACCATGGAGCTCGGCGGTAAGTCACCGCTGATCATCTTCAACGATGCCGATATCGACAATGCGGT TTCTGCGGCCATGCTGGCTAACTTCTACACCCAGGGCGAAGTCTGCACCAACGGTACCCGCGTATTCGTACAACAAGATA TCTATCCGCAGTTTATTGAAAAACTGCTGCAGCGCACCCGAGACAACATAGTCTGCGGCGATCCTATGGCTCCGGAGACT AACTTCGGTGCTCTAATCTCAAAGGCACACCGAGACAAAGTCCTGAGTTACATCGAGATAGGTAAAAAAGAGGGCGCGGA GCTGCTCGCTGGCGGTCATGCACTTTCGCCTGATAATGCCCCCAATGGCTTCTTCGTCGCACCGACCATCTTTGGTAACT GCACCGATAAGATGACATTGAGCCAAGAGGAGATCTTTGGCCCTGTGATGTCACTATTGACCTTCACCGACGAAGAGGAA GTGATCCGCCGCGCCAACGATACTCGTTTAGGCTTAGCCGCAGGCGTATTTACCCAAGACATTACTCGCGCCCATCGCGT AATTCATCAAATGCAAGCAGGGATATGCTGGATCAATGCCTATGGTGCCTCCCCTGCAGAGATGCCGGTTGGTGGCTACA AGATGTCAGGCATTGGCCGTGAGAATGGTAGTGAGACCCTAAAAGCATACACCCAAATCAAAGCCGTATACGTTGGTATG CAGCCTCTTGAAAGTCCGTTTTAA Protein sequence : MSLVVYQNYVHGQSLSNDTGETFEVINPATGKVSYLVESADASIQKAAIASAKRGFAVWSKMTAMERSRILLKAVALLRE QNDELAAIEVQDTGKPWQEASVVDVVTGADSIEFFAGLAPSIEGNQQQVGDDFYYTRREPLGICAGIGAWNYPLQIACWK SAPALACGNVMIFKPSEETPLGAIKLAEILTQAGVPDGVFNVVQGDGRVGAWLTTHDDIAKVSFTGEVGTGKKVMAAAAG SLKEVTMELGGKSPLIIFNDADIDNAVSAAMLANFYTQGEVCTNGTRVFVQQDIYPQFIEKLLQRTRDNIVCGDPMAPET NFGALISKAHRDKVLSYIEIGKKEGAELLAGGHALSPDNAPNGFFVAPTIFGNCTDKMTLSQEEIFGPVMSLLTFTDEEE VIRRANDTRLGLAAGVFTQDITRAHRVIHQMQAGICWINAYGASPAEMPVGGYKMSGIGRENGSETLKAYTQIKAVYVGM QPLESPF |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
VC0819 | NP_230467.2 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 9e-71 | 41 |
hpaE | AAO17179.1 | HpaE | Not tested | tcd island | Protein | 3e-77 | 41 |
aldA | AAC12273.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 5e-74 | 41 |
aldA | AAK20747.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 5e-74 | 41 |
aldA | AAK20776.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 5e-74 | 41 |
aldA-1 | YP_001216300.1 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 2e-73 | 41 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
Ssed_1120 | YP_001472859.1 | betaine aldehyde dehydrogenase | VFG0082 | Protein | 4e-71 | 41 |