Gene Information

Name : Ssed_1120 (Ssed_1120)
Accession : YP_001472859.1
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Virulence
Product : betaine aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 1334393 - 1335856 bp
Length : 1464 bp
Strand : -
Note : catalyzes the formation of betaine from betaine aldehyde

DNA sequence :
ATGTCGTTAGTTGTTTATCAAAATTATGTCCATGGACAGTCTCTCTCCAACGACACAGGTGAAACCTTTGAAGTCATTAA
CCCCGCTACCGGAAAAGTCAGCTATTTAGTCGAGAGCGCCGATGCGAGCATTCAGAAAGCGGCCATAGCAAGTGCCAAGA
GAGGTTTTGCCGTCTGGTCAAAAATGACCGCGATGGAACGCAGTCGCATCCTATTAAAAGCCGTCGCACTCCTCCGTGAG
CAAAATGACGAGCTCGCCGCTATCGAGGTGCAAGATACAGGCAAACCTTGGCAGGAAGCCTCCGTGGTCGATGTCGTTAC
CGGCGCAGACTCCATTGAGTTTTTCGCAGGCCTTGCCCCGAGTATCGAAGGCAACCAGCAACAAGTTGGCGATGATTTCT
ATTACACCCGCCGCGAGCCGCTGGGTATTTGCGCTGGCATCGGTGCATGGAACTACCCGCTACAGATCGCCTGTTGGAAA
TCTGCACCTGCATTAGCCTGCGGTAACGTGATGATCTTTAAACCATCGGAAGAGACGCCACTCGGCGCCATAAAACTGGC
CGAAATATTGACTCAAGCAGGTGTGCCCGATGGCGTCTTTAATGTCGTCCAGGGAGATGGCCGTGTTGGCGCCTGGCTGA
CCACCCATGATGATATCGCTAAAGTCTCATTCACCGGTGAAGTGGGTACGGGCAAGAAAGTGATGGCCGCCGCTGCGGGC
TCACTGAAAGAGGTCACCATGGAGCTCGGCGGTAAGTCACCGCTGATCATCTTCAACGATGCCGATATCGACAATGCGGT
TTCTGCGGCCATGCTGGCTAACTTCTACACCCAGGGCGAAGTCTGCACCAACGGTACCCGCGTATTCGTACAACAAGATA
TCTATCCGCAGTTTATTGAAAAACTGCTGCAGCGCACCCGAGACAACATAGTCTGCGGCGATCCTATGGCTCCGGAGACT
AACTTCGGTGCTCTAATCTCAAAGGCACACCGAGACAAAGTCCTGAGTTACATCGAGATAGGTAAAAAAGAGGGCGCGGA
GCTGCTCGCTGGCGGTCATGCACTTTCGCCTGATAATGCCCCCAATGGCTTCTTCGTCGCACCGACCATCTTTGGTAACT
GCACCGATAAGATGACATTGAGCCAAGAGGAGATCTTTGGCCCTGTGATGTCACTATTGACCTTCACCGACGAAGAGGAA
GTGATCCGCCGCGCCAACGATACTCGTTTAGGCTTAGCCGCAGGCGTATTTACCCAAGACATTACTCGCGCCCATCGCGT
AATTCATCAAATGCAAGCAGGGATATGCTGGATCAATGCCTATGGTGCCTCCCCTGCAGAGATGCCGGTTGGTGGCTACA
AGATGTCAGGCATTGGCCGTGAGAATGGTAGTGAGACCCTAAAAGCATACACCCAAATCAAAGCCGTATACGTTGGTATG
CAGCCTCTTGAAAGTCCGTTTTAA

Protein sequence :
MSLVVYQNYVHGQSLSNDTGETFEVINPATGKVSYLVESADASIQKAAIASAKRGFAVWSKMTAMERSRILLKAVALLRE
QNDELAAIEVQDTGKPWQEASVVDVVTGADSIEFFAGLAPSIEGNQQQVGDDFYYTRREPLGICAGIGAWNYPLQIACWK
SAPALACGNVMIFKPSEETPLGAIKLAEILTQAGVPDGVFNVVQGDGRVGAWLTTHDDIAKVSFTGEVGTGKKVMAAAAG
SLKEVTMELGGKSPLIIFNDADIDNAVSAAMLANFYTQGEVCTNGTRVFVQQDIYPQFIEKLLQRTRDNIVCGDPMAPET
NFGALISKAHRDKVLSYIEIGKKEGAELLAGGHALSPDNAPNGFFVAPTIFGNCTDKMTLSQEEIFGPVMSLLTFTDEEE
VIRRANDTRLGLAAGVFTQDITRAHRVIHQMQAGICWINAYGASPAEMPVGGYKMSGIGRENGSETLKAYTQIKAVYVGM
QPLESPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 9e-71 41
hpaE AAO17179.1 HpaE Not tested tcd island Protein 3e-77 41
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 5e-74 41
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 5e-74 41
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 5e-74 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ssed_1120 YP_001472859.1 betaine aldehyde dehydrogenase VFG0082 Protein 4e-71 41