|
Name : Tlet_1006 (Tlet_1006) Accession : YP_001470636.1 Strain : Thermotoga lettingae TMO Genome accession: NC_009828 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1032663 - 1034462 bp Length : 1800 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domai DNA sequence : GTGAAAAGGAAGATGGCACTTTTTCTTATCGACATCAGCTTGACTTTTTTTGCCGGTGTAGTAGCTCTTTTTGTGAGATT AGGCTTCGACTGGCCTGAGCTCGCAAAATATTTTTTAAGTATACCTATTTACTGCACAATAGCTGCCATTGTGTATATTG CGAATGGGACATACAAAATAGTTTGGCTTTATGCTTCTTTTAAAGATATGGTGCTGTTGATGAGAGGAACAATTATCGCA TATCTTTTAAATGTGGTTTTTTTTCACCTGACGAATTTTGTTGTTTTGCCCCGATCAGTTGGAATGATGACTTTTCTCGG TTCAACAATGATTCTCATAGCGAGCAGATTTTTTTGGCAATGGCTAAACACCGTCCCACCCTCAGCAGGAAAACGTGTAC TGATAGTTGGTGCAGGTAGTGCCGGAACCATGCTACTTGAAGATTTTGAACACCGCCCACAGCTCGGCAAGGTAGTTGGA TTCATCGACGATTCACCAAGAAAGATAGGCAGGAAAATTCATGGTGTGCCTGTGTACGGTCCCGCTGATAGAGCTATGGA AATTGTAGAGATGCTCAAAATCGACGAAGTTATTATAGCTATACCTTCAGCCACAGCTGAGCAGATGAGGAGGATCATTT CTCTGATAAATCCAAGAAGAGTAAAGATAAGAACTCTTCCTGGCATATATGAATTAACAGATGGTCAAGCAAGAGCGGGA TCGCTCAGGGAACTAAAAATAGAAGATCTGCTTGGAAGAGAAGAAGTAAAAGTTGATCTGCAGCAAATAAAATCGTACAT AAACGGTAAAAGAATAATGGTTACCGGTGCCGGCGGGAGCATAGGAAGTGAATTATGCAGGCAGTTATCAAAACTTGAAC CTTCTACTCTTATACTGCTTGGTAAAGGAGAAAATAGCATATATAAAATTGACGAAGAACTCCGTGTAGAAAATCCATCC GTAGAAAGAATAAGGGTAATAGCAGATATATCAGATCCAACCAGAATGGAACAAGTTTTTCGACTAACAAGGCCACAGAT AGTTTTCCATGCTGCTGCACATAAACATGTTCCGTTGATGGAAGAAAATCCTTATGAAGCCCTGAAGGTAAATACACTCG GAACAAAAATCGTTGCTGAACTGTGCTGTAAATTTGAAGCCGAAAAAATGATATTCATATCAACAGATAAAGCCGTTAAT CCTTCTTCAATAATGGGTGCAACAAAACGATTAGCTGAATTACTTCTTCTCTCAATGAATCAGGGTTGCAAAACCAATTT CGTTATTGTGAGGTTTGGCAATGTTATAGGTAGTCGAGGAAGTGTAGTTCCAAAATTCATGGACCAAATTTCAAAAGGCG GCCCTGTTACAGTAACAGATCAGCGCATGGTGAGATATTTTATGAGCCTTTCAGAAGCAGTATCTCTGGTTTTACAAGCT GGAAGTTTTGGAACAAACAAAGATCTTTTTGTTCTTGACATGGGTAAACCCATATCCATAGATGAACTTGCAAGAACAAT GATTTTGCTCAATGGGTTGATACCAGAGCAGGATATAAAGATTGTTTACACAGGCAGTAGAAGTGGCGAAAAAATGTCTG AAGAATTATTCTATGAAGATGAGTTCGTTGAGTCAACGAAGCATCCAAAGGTCAAAATGGTGAAAACAAAAAAGAAGATA GCTTATGAAGAACTCTGTAAATCACTTGAAGAAATGATAAAACTGTCAATAGACAAACCTGGAGAATTGATAGAATACGT GAAACGCTTTCTGAGATCCATTGAAGAGGGGAAAAAATGA Protein sequence : MKRKMALFLIDISLTFFAGVVALFVRLGFDWPELAKYFLSIPIYCTIAAIVYIANGTYKIVWLYASFKDMVLLMRGTIIA YLLNVVFFHLTNFVVLPRSVGMMTFLGSTMILIASRFFWQWLNTVPPSAGKRVLIVGAGSAGTMLLEDFEHRPQLGKVVG FIDDSPRKIGRKIHGVPVYGPADRAMEIVEMLKIDEVIIAIPSATAEQMRRIISLINPRRVKIRTLPGIYELTDGQARAG SLRELKIEDLLGREEVKVDLQQIKSYINGKRIMVTGAGGSIGSELCRQLSKLEPSTLILLGKGENSIYKIDEELRVENPS VERIRVIADISDPTRMEQVFRLTRPQIVFHAAAHKHVPLMEENPYEALKVNTLGTKIVAELCCKFEAEKMIFISTDKAVN PSSIMGATKRLAELLLLSMNQGCKTNFVIVRFGNVIGSRGSVVPKFMDQISKGGPVTVTDQRMVRYFMSLSEAVSLVLQA GSFGTNKDLFVLDMGKPISIDELARTMILLNGLIPEQDIKIVYTGSRSGEKMSEELFYEDEFVESTKHPKVKMVKTKKKI AYEELCKSLEEMIKLSIDKPGELIEYVKRFLRSIEEGKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 6e-74 | 45 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-77 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Tlet_1006 | YP_001470636.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 4e-76 | 43 |
