|
Name : CCC13826_1326 (CCC13826_1326) Accession : YP_001466779.1 Strain : Campylobacter concisus 13826 Genome accession: NC_009802 Putative virulence/resistance : Virulence Product : elongation factor P (EF-P) Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : - Position : 919372 - 920847 bp Length : 1476 bp Strand : - Note : identified by match to protein family HMM PF00171 DNA sequence : ATGAAACTACTTGAAAAATACGGGCTTTTCATAAATGGTGAGTGGCGTGACGCAAAAGACGGCGCTACACTTGATGCCAA AAATCCAGCAAACGGCGAGCACCTTGCAAAGATCGCTGACGCTACTGAAGAAGATGTAAATGACGCAGTTCGTGCTGCAC GTGAAGCTTTTAAGAAATTTAAACACACCACAATTAGTGAGCGAGCAAAGCTTTTAAACAAGATCGCTGATATCATCGAC GAGCACAAAGAGCACCTTGCAAAAGTCGAGAGCATGGACAACGGCAAGCCGATTAGAGAGACTCTAAATGTCGATATCCC TTTTGCGGCCGAGCACTTTAGGTACTTTGCTGGCGTTATCATGGGAGAAGAAGGCAGCGCAAACGTGCTTGATGAGAAGC AACTCTCTATCGTTTTGCGCGAGCCAATAGGCGTTGTGGGTCAGATCGTACCTTGGAATTTTCCATTTTTAATGGCAGCT TGGAAGCTAGCTCCTGTGATCGCAGCAGGCGATGCGAGCGTGTTTAAACCTTCAAGCGAGACAAGTCTAAGCGTGCTTGA GCTATTTAGGCTGATAGATAAAATTTTGCCAAAAGGTTTGATAAATATAGTAACCGGAAGAGGTAGCAAGAGCGGCGAGT GGATCAAAAACCACCCAGGCCTTGACAAGCTAGCATTTACTGGCTCAACCGAGATCGGCCGTGATATCGCCATAGCTGCG GCTCGCCGCATCATCCCAGCTACACTTGAGCTTGGTGGCAAAAGCGCAAATATCTTCTTTAGCGATGCAAATTTAGACAA GGCGCTTGACGGCCTTCAGCTTGGAATTTTGTTTAACCAAGGTCAAGTTTGCTGCGCGGGATCGAGAATTTTCGTAGAAG AGAGCTTTTATGACAAATTTATAGAGGCTGCGGTTAAGAAATTTAGTACTATAAAAGTTGGCGATCCGCTAGATCCTAGC ACTCAAATGGGCTCTCAGATCAATAAAAAACAAGCTGAGCAAATCTTAAACTACGTCGAGATCGGCAAAAAAGAAGGTGC AAAAGTGGCAGTCGGTGGCAAAGCCTACACCGCAAATGGTTGCGACAAGGGCGCATTTGTCGAGCCAACACTGCTAGTTG ATGTGACAAATGATATGAGAGTGGCTCAGGAGGAAATCTTTGGACCAGTTGGTGTTGTCATCAAATTTAAAGATGAAGCC GAGCTTATCAAAATGGTAAATGACAGCGAATACGGTCTTGGTGGCGGTATTTTCACGCAAGACATTACAAAAGCACTTCG CGTTGCAAGGTCTATGGAAACTGGCAGGGTCTGGATCAACACTTACAACCAAATTCCAGCAGGCAGCCCATTTGGCGGAT ATAAAAACTCAGGTATCGGCCGTGAGACGCACAAGATCATCCTTGAGCACTACACTCAGATGAAAAACATCATGATAGAT CTCACCGGTAAGGTCAGCGGCTTTTACGCACAATGA Protein sequence : MKLLEKYGLFINGEWRDAKDGATLDAKNPANGEHLAKIADATEEDVNDAVRAAREAFKKFKHTTISERAKLLNKIADIID EHKEHLAKVESMDNGKPIRETLNVDIPFAAEHFRYFAGVIMGEEGSANVLDEKQLSIVLREPIGVVGQIVPWNFPFLMAA WKLAPVIAAGDASVFKPSSETSLSVLELFRLIDKILPKGLINIVTGRGSKSGEWIKNHPGLDKLAFTGSTEIGRDIAIAA ARRIIPATLELGGKSANIFFSDANLDKALDGLQLGILFNQGQVCCAGSRIFVEESFYDKFIEAAVKKFSTIKVGDPLDPS TQMGSQINKKQAEQILNYVEIGKKEGAKVAVGGKAYTANGCDKGAFVEPTLLVDVTNDMRVAQEEIFGPVGVVIKFKDEA ELIKMVNDSEYGLGGGIFTQDITKALRVARSMETGRVWINTYNQIPAGSPFGGYKNSGIGRETHKIILEHYTQMKNIMID LTGKVSGFYAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0819 | NP_230467.2 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 7e-94 | 49 |
| aldA | AAC12273.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 8e-98 | 48 |
| aldA | AAK20747.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 8e-98 | 48 |
| aldA | AAK20776.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 8e-98 | 48 |
| aldA-1 | YP_001216300.1 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 2e-97 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CCC13826_1326 | YP_001466779.1 | elongation factor P (EF-P) | VFG0082 | Protein | 3e-94 | 49 |
