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Name : nifJ (CCC13826_1933) Accession : YP_001466147.1 Strain : Campylobacter concisus 13826 Genome accession: NC_009802 Putative virulence/resistance : Virulence Product : pyruvate:ferredoxin (flavodoxin) oxidoreductase Function : - COG functional category : C : Energy production and conversion COG ID : COG0674 EC number : 1.2.7.1 Position : 232366 - 235944 bp Length : 3579 bp Strand : - Note : identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 DNA sequence : ATGTCAAAAATAATGAAAACTATGGACGGAAACGAGGCCGCAGCTTACGCGTCATACGCATTTACCGAAGTAGCTGGAAT TTACCCTATCACTCCTAGCTCGCCTATGGCTGACTATACTGACCTTTGGGCAGCGCAGGGCAAGAAAAATTTATTTGGTA TGCCAGTAAAAGTAGTCGAAATGCAAAGCGAGGGCGGTGCAGCTGGCACGGTGCATGGCTCGCTACAAGTTGGCGCGCTA ACTACGACCTACACAGCTTCTCAAGGCCTACTTTTAAAAATTCCAAATATGTATAAGATAGCAGGTCAGCTCCTCCCTGG TGTCATCCATGTCTCAGCTCGCTCTCTGGCGGCACAGGCTCTTTCAATATTTGGCGACCACCAAGATATCTACGCCTGTC GCCAAACTGGCTTTGCTATGCTAGCAAGCGGCTCGGTGCAAGAGGTGATGGACATCGCTGGCGTGGCGCATTTAGCGGCG ATTAAGGGCAGAGTGCCATTTTTACACTTCTTTGATGGCTTTAGAACGAGCCATGAAATTCAAAAAGTAGAAGTGATGGA CTACGCGCACTTTGATAGACTTCTTGACCGCGAAGCATTGCAGAAATTTAGAGACGAAGCGCTAAATCCAGAGAGCCCAA AAACAAGAGGCACAGCGCAAAATGACGATATCTACTTTCAAACAAGAGAGCTAAGCAACCGCTTTTATAACGCAGTGCCA GATATCGTAGCAGAGTATCTAGCTGAAATTTCAAAGATCACTGGCCGCGACTACAAGCCGTTTAACTACTACGGCAACCC AGAAGCGACGCGCGTCATCGTAGCTATGGGCTCAGTGACGCAAACTCTTGAAGAGGTCGTTGATTATCTAAACGCAAAAG GCGAAAAGGTGGGCATCATCAAGGTGCATTTGTACCGCCCATTTAGCACGAAGTATCTCTTTGACGTGATGCCAAAGAGC GTGAAAAAAATAGCCGTTCTTGACCGCACAAAAGAGCCTGGCAGCCTTGGCGAGCCACTATATCTTGATATAAAAGCTGC ATTTTACGGCCAAAAAGACGCTCCAGTTATCGTTGGCGGCAGATACGGCCTAAGCTCAAAGGATGTCGATCCTGCGCAAA TGCTAGCTGTGTTTGAAAATTTAAACCAAAGCGAGCCAAAAGACGGCTTTACGGTGGGTATCGTTGATGACGTCACTTTT ACCTCGCTACCAACTGGAGAGAAAATTTCACTAAGCGATGAGAGCGTTAAAGAGTGCTTATTTTACGGCCTTGGCGCTGA TGGCACCGTGGGCGCAAACAAAAACTCTATAAAGATCATCGGCGATAAGACTGATCTTTACGCACAGGCATATTTTGCCT ACGATAGTAAAAAATCAGGCGGTTACACGCGCTCGCACCTTCGCTTTGGCAAAAAGCCGATCCGCTCGACCTATCTCGTC TCAAACCCGCACTTTGTAGCCTGCTCAGTCGCAGCATATCTTGAAATTTATGACGTGATTGACGGCATTAGAGAAAACGG CACATTTTTATTAAACTCTATCTGGGACGCAGAGCAGACCATAGCGAAGCTACCAAATAAAGTTAAGAAAATTTTAGCTA GCAAAAATATAAATTTCTACATCATAAACGCAACAAAGCTAGCACACGACATCGGCCTTAAAAACCGCACAAACACCATA ATGCAGTCGGCATTTTTCAAGCTTGCTGACATCATACCATTTGAAGATGCGCAAAAATATATGAAAGAGTACGCGCACAA AGCCTACGCTAAAAAAGGCGAGGCGATCGTGCAGATGAACTACAACGCTATCGACGTTGGCGCAAATGGACTCATAAAAG TACCAGTCGATCCTGCGTGGGCAAATTTAATAGACGATGAACAAAAAGATGAAAAATACATCGGCAACAGCTTCATCGAA AACGTTGTAAAACCGATAAATGCGGCCAGAGGTGATAGCCTACCAGTCTCAACCTTCATAGGCTACGAGGACGGCCACTT TGAAGCTGGCACGACGGCTTACGAGAAACGCGGCGTTGGCGTCATGGTGCCAAAATGGATCGAGCAAAACTGCATCCAGT GCAACCAGTGCGCATTTGTCTGCCCGCACGCTGTAATCAGGCCATTTTTGATAGACGAAAACGAGCTTAGCGCAGCCCCA CAAGGCGTAAAAGAGCACAATCTAGAGGCAAAAGGCAAAGAGCTCAAGGGACTAAAATACAAGATCCAAGTAAGCCCGCT AGACTGCACCGGATGCGAGCTGTGCGCGCAAAACTGCCCAAGTAAAGAAAAATCGCTCGTAATGGTGCCGCTTGAAGAAG AGCTAGGCAAAAACGAGCAAGAAAATGCTGATTATCTATTTAAAAAGGTCGCTTATAAAGACGATCTCATGAACAAAGAG AGCGTTAAAGGCGTTGGCTTTGCTAAGCCGCTCTTTGAATTCCACGGCGCTTGCCCAGGATGTGGCGAAACTCCGTATAT CACGCTTATTACAAGGCTTTTTGGCGAGCGTATGATCGTGGCAAACGCGACTGGTTGTAGCTCGATATATGGCGGCTCAG CCCCATCTACTCCGTACACCACAAATGACGAAGGCAAGGGCGTTGCGTGGGCAAATTCGCTATTTGAAGATAACGCTGAG TTTGGCATGGGTATGAACGTAGCGATCGAGACTATGCGCCACCGCATCGAAGATATAATGAGAAACAACATAGATAGCGT GCCAAACGCACTTTCAGCGCTTTACAACGACTGGATAAATTTCAAAAATGACGGCGAAAAAACGCAAGAGATCACGAAAA ATTTATTGCCTATTTTAGAGCAAAATTTAAGCGCGCTAGGCGTGAAAGAAATTTTAGAGCTTAAGAAATTTCTCGTCAAA AAGTCGCAATGGATCATCGGCGGCGACGGCTGGGCGTATGACATCGGCTTTGGCGGACTTGACCACGTGCTAGCAAGCGG TGAGAACGTAAATGTGCTAGTGCTTGACACCGAGGTTTATTCAAATACTGGTGGCCAAAGCTCTAAATCAAGCCGCGCAG GCTCGATAGCGCAGTTTACGGCTAGCGGCAAGCCGGCTCAGAAAAAGGACCTTGGCTACATCGCGATGACTTACGGCAAC ATTTTCGTAGCACAGATCAACTCAAACGCAAGCCAAGCAAACGTGATAAAAGCGATCGCAGCAGCCGAAGCCTATGACGG CCCAAGCCTCATCATCGCCTACTCTCCGTGCATCGCTCACGGCATCAAAGGCGGCTTGTCGCAGTCTGGTGGCCAAGGCG AACTCGCTACAAAATGCGGATACTGGCCGACATATCTATACGATCCGCGCCTTTTAAAAGAGGGGCAAAATCCGCTCAAA ATCACTTCAAAAGAGCCTGACTGGTCGCTTTATGAAGAGTTTTTGCTAAACGAGGTTCGCTACAACTCGCTTAAAAAGAC CAACCCTGAGCACGCAGACGAGCTACTAGCTAAAAATAAGGCCGATGCGCAAAGACGCTACCGCCAGCTAAAACGCCTAA GCCTAGCCGACTTTAGCGACGAGATAGAGAACAGCGAAGCTGCGCAAAGCGCTGAATAA Protein sequence : MSKIMKTMDGNEAAAYASYAFTEVAGIYPITPSSPMADYTDLWAAQGKKNLFGMPVKVVEMQSEGGAAGTVHGSLQVGAL TTTYTASQGLLLKIPNMYKIAGQLLPGVIHVSARSLAAQALSIFGDHQDIYACRQTGFAMLASGSVQEVMDIAGVAHLAA IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALQKFRDEALNPESPKTRGTAQNDDIYFQTRELSNRFYNAVP DIVAEYLAEISKITGRDYKPFNYYGNPEATRVIVAMGSVTQTLEEVVDYLNAKGEKVGIIKVHLYRPFSTKYLFDVMPKS VKKIAVLDRTKEPGSLGEPLYLDIKAAFYGQKDAPVIVGGRYGLSSKDVDPAQMLAVFENLNQSEPKDGFTVGIVDDVTF TSLPTGEKISLSDESVKECLFYGLGADGTVGANKNSIKIIGDKTDLYAQAYFAYDSKKSGGYTRSHLRFGKKPIRSTYLV SNPHFVACSVAAYLEIYDVIDGIRENGTFLLNSIWDAEQTIAKLPNKVKKILASKNINFYIINATKLAHDIGLKNRTNTI MQSAFFKLADIIPFEDAQKYMKEYAHKAYAKKGEAIVQMNYNAIDVGANGLIKVPVDPAWANLIDDEQKDEKYIGNSFIE NVVKPINAARGDSLPVSTFIGYEDGHFEAGTTAYEKRGVGVMVPKWIEQNCIQCNQCAFVCPHAVIRPFLIDENELSAAP QGVKEHNLEAKGKELKGLKYKIQVSPLDCTGCELCAQNCPSKEKSLVMVPLEEELGKNEQENADYLFKKVAYKDDLMNKE SVKGVGFAKPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAPSTPYTTNDEGKGVAWANSLFEDNAE FGMGMNVAIETMRHRIEDIMRNNIDSVPNALSALYNDWINFKNDGEKTQEITKNLLPILEQNLSALGVKEILELKKFLVK KSQWIIGGDGWAYDIGFGGLDHVLASGENVNVLVLDTEVYSNTGGQSSKSSRAGSIAQFTASGKPAQKKDLGYIAMTYGN IFVAQINSNASQANVIKAIAAAEAYDGPSLIIAYSPCIAHGIKGGLSQSGGQGELATKCGYWPTYLYDPRLLKEGQNPLK ITSKEPDWSLYEEFLLNEVRYNSLKKTNPEHADELLAKNKADAQRRYRQLKRLSLADFSDEIENSEAAQSAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AFJ97267.1 | pyruvate ferredoxin | Virulence | Not named | Protein | 0.0 | 79 |
