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Name : CCC13826_1886 (CCC13826_1886) Accession : YP_001467824.1 Strain : Campylobacter concisus 13826 Genome accession: NC_009802 Putative virulence/resistance : Virulence Product : arabinose 5-phosphate isomerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : 5.3.1.13 Position : 2021222 - 2022175 bp Length : 954 bp Strand : + Note : identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 DNA sequence : ATGCAAAAAGCCAACCAAATCGCTGCTGAAGTCTTAGAGATAGAAGCAAACGAGCTTTTAAGACACGCTAAAAGCGTAGA GATAGAAGATGCCGTAAATTTGATATTTAATGCAAAAGGCAAAGTCATAGTAACAGGCGTGGGCAAGAGCGGTCATGTGG GCGCAAAGATCGCTGCTACGCTTGCAAGCACTGGCACGCCAAGCTTTTTCTTACATCCGACAGAGGCCATGCATGGTGAC CTTGGCATGATAGAAAAAGACGACATCTTGTTAGCCATTAGTTTTAGTGGCGAAAGCGATGAGCTTATCAAAATTTTGCC TCACGTAAAGCGCTTTGGCGTAAAAATAGTCGCCATGGCAAGAAGCAAGACAAGCTCGCTTGGTAAATTTAGCGACGCTT TTATAGATATAAATGTAGAAAAAGAGGCGTGCCCACTAAATGCCGCTCCAACGGCATCAACCACGCTAACGTTAGCTCTT GGCGATGCGTTAGCTGTTTGTTTGATGCAAAAGCGCGGCTTCAAAAAAGAGGACTTTGCAAATTTTCATCCAGGTGGTAG CCTTGGCAAGAGGCTATTTTTGAAGGTCAAAGATGTGATGAGAAGCGAAAATTTACCGATAGTCCGCTGGAATGCAACCC TAAAAAGTGCGATCGATACCATGACGCATGGCAAGCTTGGCACGGTTTTAATAATCGGTAAAGATGGCGTGCTAGACGCT CTTTTAAGTGACGGCGATCTTAGGCGCGCGCTTATGAGAGAGGACTTTGACCTAGAAGAGCCAGCGATGAAATTTGCAAC CTTGCATCCAAAAGAGATAAACGACAAAGAGATGTTAGCCGTAGATGCGTTAGCTTTGATAGAAAAATACAAAATTCAGC TTCTAGCTGTCGTAGAAAATGGCGTGCCTGTGGGTGTTTTACACATCCACGACCTTGCAAATTTAGGACTATAA Protein sequence : MQKANQIAAEVLEIEANELLRHAKSVEIEDAVNLIFNAKGKVIVTGVGKSGHVGAKIAATLASTGTPSFFLHPTEAMHGD LGMIEKDDILLAISFSGESDELIKILPHVKRFGVKIVAMARSKTSSLGKFSDAFIDINVEKEACPLNAAPTASTTLTLAL GDALAVCLMQKRGFKKEDFANFHPGGSLGKRLFLKVKDVMRSENLPIVRWNATLKSAIDTMTHGKLGTVLIIGKDGVLDA LLSDGDLRRALMREDFDLEEPAMKFATLHPKEINDKEMLAVDALALIEKYKIQLLAVVENGVPVGVLHIHDLANLGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 2e-47 | 44 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 1e-47 | 44 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 4e-47 | 44 |
