Gene Information

Name : CCC13826_1181 (CCC13826_1181)
Accession : YP_001466070.1
Strain : Campylobacter concisus 13826
Genome accession: NC_009802
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 137747 - 138232 bp
Length : 486 bp
Strand : +
Note : identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358

DNA sequence : 
ATGGCAGAGAATTCAATCCCACCAAAAGAACGTATAAACATTGTTTATAGAACAAAAACAAACAACCAAGAAGCAGATGT
TGAGCTTCCGTTAAAGCTGATGGTAGTTTCAAATTTAACTGGTGAAAACCAAACTCCACTTGAAGATCGCGAAGTTGTCT
CTATAAATAAGATAAATTTCGATCAGGTTATGAAAAGTTTGGACATTCATACTGAATTTTCAGTGAAAAATAGACTAAAT
TCTGGTAGCGAAGATCTAAATATCGATCTTAACTTTGAAAGCATTCAAGATTTCAATCCAGACAATATCATCAACCAAGT
ACCTGAGCTAAAAAAGCTATTGCAGCTTAGAAAAGCTTTAGTTGCATTAAAAGGACCTATGGGCAATATGCCTGATTTTA
GAAAAGCAGTTTTAGAGGCTATTAAGGATGAAGATAGTAGAAAACAGCTTCTTTTAGAGCTTAAAGACGAAAAAGATAAG
GAATAA

Protein sequence : 
MAENSIPPKERINIVYRTKTNNQEADVELPLKLMVVSNLTGENQTPLEDREVVSINKINFDQVMKSLDIHTEFSVKNRLN
SGSEDLNIDLNFESIQDFNPDNIINQVPELKKLLQLRKALVALKGPMGNMPDFRKAVLEAIKDEDSRKQLLLELKDEKDK
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 3e-46 66
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 5e-29 43
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 3e-29 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CCC13826_1181 YP_001466070.1 type VI secretion protein VFG2092 Protein 6e-34 49
CCC13826_1181 YP_001466070.1 type VI secretion protein VFG2474 Protein 2e-32 45