Gene Information

Name : fimC (EcE24377A_0573)
Accession : YP_001461720.1
Strain : Escherichia coli E24377A
Genome accession: NC_009801
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 593881 - 594573 bp
Length : 693 bp
Strand : +
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAATCATTTCGGCCAGCGCCCATGCTGCCGGAGGGAT
CGCATTAGGTGCCACGCGTATTATTTATCCCGCTGATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATG
AGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTT
GTTAGTGAACCCAAAAGCGAAAATACCTTGCGTATTATTTACACCGGTCCACCGCTGGCGGCAGATCGTGAGTCTCTGTT
CTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTAT
CGCGCATGAAATTATTTCTCCGTCCAATTCAATTACAAGAATTACCCGCAGAAGCGCCGGACACACTCAAGTTTTCGCGA
TCCGGTAACTATATCAATGTTCATAATCCATCACCTTTTTATGTCACCCTCGTTAACCTGCAAGTGGGCAGCCAAAAGTT
GGGGAATGCTATGGCGGCACCCAGAGTTAGTTCACAAATTCCCTTACCCTCAGGAGTGCAGGGAAAGCTGAAATTTCAGA
CCGTTAATGATTATGGTTCAGTAACCCCGGTCAGAGAAGTGAACTTAAACTAA

Protein sequence : 
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 7e-43 46
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 5e-38 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimC YP_001461720.1 chaperone protein FimC VFG0445 Protein 7e-65 64
fimC YP_001461720.1 chaperone protein FimC VFG0875 Protein 4e-44 49
fimC YP_001461720.1 chaperone protein FimC VFG1644 Protein 3e-38 45
fimC YP_001461720.1 chaperone protein FimC VFG0911 Protein 5e-38 45