Gene Information

Name : EcE24377A_4862 (EcE24377A_4862)
Accession : YP_001465793.1
Strain : Escherichia coli E24377A
Genome accession: NC_009801
Putative virulence/resistance : Unknown
Product : IS66 family orf1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 4853337 - 4853726 bp
Length : 390 bp
Strand : -
Note : identified by match to protein family HMM PF01527

DNA sequence :
GTGTCAGATATGCAGAAAAATGTGACTCCCGGCAGGCGAAAAGGCTGCCCTAATTATCCTCCCGAATTTAAACAGCAGCT
CGTTGCTGCCTCCTGTGAACCCGGGATATCCATCTCAAAACTTGCTCTTGAAAATGGCATTAACGCCAATCTGTTGTTCA
AATGGCGACAACAATGGCGCGAGGGAAAGCTGCTATTACCTTCTTCAGAGAGCCCCCAGCTACTTCCTGTGACTCTCGAT
GCAGCTGCCGAACAGCCAGAATCGCTCGCAGAGGACCCGGAAACCCTCAGTATCAGCTGTGAGGTAACGTTCCGGCACGG
GACGCTCCGCTTCAATGGCAATGTCAGCGAAAAGCTCCTGACTCTGCTGATACAGGAACTGAAGCGATGA

Protein sequence :
MSDMQKNVTPGRRKGCPNYPPEFKQQLVAASCEPGISISKLALENGINANLLFKWRQQWREGKLLLPSSESPQLLPVTLD
AAAEQPESLAEDPETLSISCEVTFRHGTLRFNGNVSEKLLTLLIQELKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL99257.1 unknown Not tested LEE Protein 5e-47 100
unnamed ACU09437.1 IS66 family element orf1 Not tested LEE Protein 5e-47 100
l0013 CAD33777.1 L0013 protein Not tested PAI I 536 Protein 6e-47 99
ECs4545 NP_312572.1 hypothetical protein Not tested LEE Protein 6e-48 99
unnamed AAL08462.1 unknown Not tested SRL Protein 2e-47 99
unnamed AAC31492.1 L0013 Not tested LEE Protein 4e-48 99
c3577 NP_755452.1 hypothetical protein Not tested PAI I CFT073 Protein 6e-48 99
Z5096 NP_290247.1 prophage-associated protein Not tested LEE Protein 6e-48 99
c3560 NP_755435.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-24 54
ECUMN_3326 YP_002414006.1 putative transposase Not tested Not named Protein 2e-24 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcE24377A_4862 YP_001465793.1 IS66 family orf1 VFG1518 Protein 2e-47 99
EcE24377A_4862 YP_001465793.1 IS66 family orf1 VFG0791 Protein 2e-48 99
EcE24377A_4862 YP_001465793.1 IS66 family orf1 VFG1053 Protein 9e-48 99
EcE24377A_4862 YP_001465793.1 IS66 family orf1 VFG1708 Protein 2e-48 99
EcE24377A_4862 YP_001465793.1 IS66 family orf1 VFG1697 Protein 7e-25 54