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Name : fimD1 (EcE24377A_4241) Accession : YP_001465216.1 Strain : Escherichia coli E24377A Genome accession: NC_009801 Putative virulence/resistance : Unknown Product : outer membrane usher protein FimD Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4229534 - 4232053 bp Length : 2520 bp Strand : - Note : identified by similarity to SP:P30130; match to protein family HMM PF00577 DNA sequence : ATGACGACCAGAATAGTGGTTGGCCTCACGGCAGGGACGTGTCTGATTTTCTCGCAAAACCTGATGGCCGAGGTCAGTGT ATTCAATCCGGCGCTTCTGGAAATCGACCATCAATCCGGAGTCGATATTCGCCAGTTTAATCGGGCAAACCTGATGCCCC CAGGTGTTTATAGCGTTGATATTTTTATCAACGGTAAAATGTTTGAACGTCAGGATGTGACATTTGTTCAGGATAATCCA GATGCTGATCTGCACGCATGCTTTATTGCCATTAAAAAAACACTGTCCTCCTTTGGCATAAAAGTTGATGCGCTCAAATC GTTCAATGATGTGGATGAGACGGTTTGCCTCGATCCTGCTCTACGTATTGAAGGCTCATCCTGGCAGTTTGACAGTGATA AATTGCAGCTGAATATATCCATTCCCCAAATCTACATGGACGCGATGGCTTATGATTACATCAGCCCCACGCGTTGGGAT GAGGGGATTAACGCGCTCACCATCAACTACGATTTTTCTGGTTCACATACACTACGTTCAGATTATGGTTCACAAGAGAC AGATACCAGTTATCTCAATCTGCGCAATGGACTGAATATTGGACCGTGGCGGCTACGTAATTACAGTACTTTAAACACCA GCGATGGCCGTGCGGAATACAACTCCATTAGTACCTGGATACAGCGCGATATTGCCGCGTTAAGAAGCCAGATTATGATT GGTGATACGTGGACGGCGAGCGATATTTTCGACAGTACGCAAATTCGCGGCGCGCGTTTGTATACTGATAACGATATGCT ACCCGCCAGCCAGAATGGCTTTGCTCCTGTGGTTCGTGGGATTGCAAAGTCCAACGCCACCGTCATCATTCGGCAGAATG GCTACGTGATTTATCAGTCTGCCGTTCCACAAGGTGCTTTTGAGATCACCGATCTCAACACCGCCAGTACAGGTGGCGAT TTGGACGTAACCATCAAAGAAGAAGACGGTAGCGAACAACGATTCACCCAACCTTATGCTTCATTGGCGATTCTTAAACG TGAAGGTCAGACAGATGTTGATGTCAGCGTGGGTGAATTGCGCGATGAAGACGGATTTACACCGGACGTCCTTCAGGCGC AAATACTTCATGGTTTTTCCCACGGGATCACTTTATATGGAGGTATGCAGGCTGCTGAAAATTATGGTTCTGCAGCTCTG GGTGTCGGTAAAGATCTTGGCGCTTTGGGCGCAATTTCTTTCGATGTGACACATGCTCGTGCGAATTTTAGCCATGATGA TACAGAAACGGGTCAGTCATATCGCTTTCTCTATTCAAAACGATTTGACGACACAGACACTAGCTTGCGCCTGGTTGGCT ATCGTTACTCCACCGAGGGCTACTATACCCTCAATGAGTGGGCATCGCGGCGCAACAGCCCTGAAGACTTTTGGGAAACA GGTAACCGACGTAGTCGCGTGGAGGGAACGCTAACGCAGTCGTTGGGGAGAGATTATGGCAATTTATACCTGACATTAAG CCGGCAACAATACTGGCATACCGATGATGTCGAACGATTAATGCAATTTGGCTACAGCAGTAGCTGGAAGCGTCTCTCGT GGAACGTCTCCTGGAGTTATTCCAATACTGCCAGACAGGGGACGGGGAACAACCATGCCAGTGATAACACCAGTGAGCAG ATCTACATGCTCTCTTTATCTGTTCCTTTATCGGGCTGGTGGGGTAATAGTTACGCCACCTATTCTGTTTCGCAAAACGA TAATTCCGGTAGCTCACATCAACTCGGACTCAGCGGTACGGCGCTGGAAAGAAATAACCTTTCATGGAATTTAATGCAGT CCTATAACAGTCATGATGATGAGGTTGGCGGTAATATGTCCCTGACCTATGATGGCTCTTATGGCACGGTGAACGGCAGC TATAACTACAGCCAAAATTCCCAGAGGCTGAATTATGGTATCAGAGGGGGAATTCTGGCACACAGCGAAGGGGTAACGTT AAGTCAGGAGTTAGGTGAAACTATTGCTCTTGTTAAAGCACCTGGGGCCGCCGGGTTAGAAATAGATAATATGCGCGGTG CTGCGACGGACTGGCGCGGCTATACGGTCAAGACACAGCTAAACCCTTATGATGAAAATCGGGTAGCAATCAGCGATAAC TATTTCTCGAAGTCGAATATAGAACTTGATAATACCGTCGTTACGATGGTTCCCACGCGTGGTGCAGTGGTTAAAGCGGA GTTTGTGACTCATGTGGGTTATCGCGTTCTCTTCAGAGTGTTAAATGCAAATGGTAAACCGGTACCTTTTGGAGCCATTG CTGCGATACAAGATGCAAGTTTGGCAGATTCAGGAATTGTCGGTGACCGTGGCGAACTTTATCTTTCTGGTCTACCAGAA AAAGGACAGGTTACGTTATCCTGGGGAGAAAACGCCTCAACAAAATGCATCTTCAATTATTCACTTTCGACACCAGAAAG TGAGAGCGGATTAATTGAACAGGGTGTGACATGTCATTAA Protein sequence : MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNP DADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPALRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWD EGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGD LDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAAL GVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQ IYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGS YNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPE KGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 99 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 99 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 0.0 | 96 |
