Gene Information

Name : EcE24377A_3316 (EcE24377A_3316)
Accession : YP_001464324.1
Strain : Escherichia coli E24377A
Genome accession: NC_009801
Putative virulence/resistance : Unknown
Product : IS1, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 3327652 - 3328155 bp
Length : 504 bp
Strand : +
Note : identified by match to protein family HMM PF03400

DNA sequence : 
ATGCCGGGCTACTGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT
AACCTCGCGCATACAGCCAGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAAT
CGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATG
GCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGACTGGCCGCTGTATGA
ATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGC
AGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTAT
CTGAACATAAAACACTATCAATAA

Protein sequence : 
MPGYCPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTM
ATLGRLMSLLSPFDVVIWMTDDWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY
LNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 4e-74 97
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 4e-74 97
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 4e-74 97
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 1e-71 96
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 5e-72 94
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 5e-72 94
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 1e-72 93
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 2e-71 93
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 4e-71 93
aec38 AAW51721.1 InsB Not tested AGI-3 Protein 1e-56 92
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 5e-55 91
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 2e-69 91

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcE24377A_3316 YP_001464324.1 IS1, transposase orfB VFG0612 Protein 4e-70 91