|
Name : EcE24377A_0289 (EcE24377A_0289) Accession : YP_001461443.1 Strain : Escherichia coli E24377A Genome accession: NC_009801 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 311933 - 315067 bp Length : 3135 bp Strand : + Note : identified by similarity to GB:AAB70710.1; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 DNA sequence : ATGCTGAGCGAAGACGATTTAGAACAGCAAAGCCTGCAATGGTTTGCTGAACTGGGCTGGGAAGTATTGCACGGGCCGGA TATTGCGCCAGATGGCAACAATCCGCTGCGTGCGTCGTTCCACGATGTGTTTTTGCGCCCGGTGCTACTGGAGCAGTTGC AAAAGATTAACCCACATCTCCCGGTTGCCGTGCTGGATGAGGTGATACTGCGTATCGCCCATGCGCAAAGCCCGGATCTG GTCGTCAGTAACAAAGCCTTCCATCACCTGCTGCTCGACGGCGTGCCGGTGCAGTACAAGCAGGATGACAAAGTTATCCA CGACAAAGCGCTACTGATGGATTTTAACCACCCAAATAATAACCACTTTACGGTGGTGAATCAGGTGGCCATCCAGGGAA CGAAGCAGGTACGTCGCCCGGACGTTATCTGCTATATCAACGGATTGCCAGTAGTAGTGATTGAGCTGAAAAGCCCGATT GATGCTAATGCCGATATCTGGGCGGCATTTAATCAGTTGCAGACCTATAAAAACGAACTCAGCGATCTGTTCATCTGCAA CGAAGCGCTGGTGGTCAGCGATGGCTACAACGCCCGTATTGGCTCTCTCACCGCGAACGAAGAGCGCTTCTTGCCGTGGA AAACGCTGTCTAATGAAGACGACAAACCGCTGTTTGAATGGCAGCTTGAAACGGTAGTAAAAGGGTTCTTTAACCGCGAA CTGCTGCTCGACTACATTCGTTACTTCATCCTGTTTGAAAGCGACGGCAAACGACTGATTAAAAAGATTGCCGCTTACCA CCAATTCCACGCAGTACGTGAAGCGGTGACGGCGACGATTGTGGCCTCTACCGGTAAACACTTGCCGCTGCGCAGCAACA TCACGCCAGGCAGTAAAAAAGCCGGTGTGGTGTGGCATACGCAGGGTTCCGGTAAGAGTATCTCGATGTGTTGTTACGCC GGAAAACTGCTACAACAAGCGGAAATGAACAACCCGACCATCGTGGTGGTGACCGACCGTAACGATCTCGACGGCCAACT GTATGCCACCTTCTGCCAGGCACAGGATTTGCTTAAGCAGGAACCGTTACAGGCAAACGATCGCGACCAGCTCCGCGAGA TGCTCAATGTCCGTGAATCAGGCGGGATTATTTTTACCACCGTACAAAAATTTGCCCCGCTTGATGGCGAACAGACTCAC CCGGCGCTAAACCTGCGCAGCAATATCGTCGTCATTTCCGATGAAGCGCACCGCAGCCAGTATGGTCTTAGCGCCACGCT GAACCGGGAGACTGGCGCTTATAAATACGGTTACGCCAAACATATGCGCGATGCGTTACCCAATGCGTCGTTTATGGGCT TTACCGGAACACCGGTTTCTTCCGAAGATAAAGACACCCGCGCGGTGTTTGGTGATTACGTCTCTATCTACGATATACAG GATGCGGTGGAAGATGGCGCAACCGTGCCTATCTACTATGAATCGCGCCTGGCAAAACTCGACCTCAACCACGAAGAGCT GGAAACGCTGTCTAATCAGGTGGATGAGCTGGTCGAAGATGAAGAGACCGATCAGAAAGAGAAAACCAAAAGTGACTGGA GCCGTCTGGAAAAACTGGTTGGTTCTGAACCTCGTATCAATGAGGTGGCCGCCGATCTGGTTCAGCATTTTGAGGCACGT AACGCCACAATGAATGGCAAAGCAATGATTGTTGCCATGAGCCGTGAGATCTGCGTGAAGCTGTATGATGCGCTGGTGGC TCTACGCCCGGAATGGCACAGTGATGACGTCGAGAAAGGTGAAATCAAAATCATCATGACCGGCTCAGCCTCCGATAATA AATTCCTTCAGCCGCACATCTACAATAAGCAAACCAAAAAACGCCTTGAAGCGCGCTTTAAAGATCTCAACGACCCGTTG AAACTGGTGATTGTGCGCGATATGTGGCTTACCGGGTTTGATGCGCCATGTTGTCATACCATGTATATCGACAAACCGAT GCGCGGGCATAATCTGATGCAGGCCATTGCGCGCGTCAACCGCGTCTTCAAAGATAAACCGGGCGGTTTAGTGGTGGATT ACATCGGTATCGCCAATGAACTGAAACAGGCGCTGAAAACTTATACCGATTCAAAAGGTAAAGGACAGACGACAGTCGAT GCTCATGAAGCGTTCTCCATCCTGCTTGAAAAGCTGGATGTGATTCATGGAATGTTTGCCAAAACACCAACCGCCGCCGG GTTTGATTACACCGGTTTTGCAGAGGTGCCCCAACGGTTTTTACTCAAAGCCGCAGATTATGTGCTGGGCCTTGATGACG GTAAGAAGCGCTTTTTCGATGTCGTGCTGGCGATGAACAAAGCCTGGTCGCTGTGCAGTACGTTAGATGAAGCTAAACCC TTGCAAAAAGAGATCGCGTTTTTGTCGGCGGTGAAAGTGGCGATTATCAAGCTGACGACAACCGACAAAAAATTCAGTCA GTCAGAGAAAAATACGCTACTCGGTAAAATCCTCGATAACGCCATTATTGCGACGGGCGTGGATGATGTGTTTGCGCTGG CGGGTCTGGATAAGCCGAATATTGGATTGTTGTCAGACGAGTTTCTGGAAGAAGTGCGCGAATTGCCGCAGCGTAATCTG GCAGTCGAGTTGCTGGAGAAACTGCTGAACGACGGCATTCATGCCCGCACCAAAAACAACGTGGTGCAGGAGAAGAAATA CTCAGATCGCCTGAAAGCCGTGCTGCTCAAATACAATAACCGCGCCATTGAAACTGCGCAGGTGATTGAAGAACTGATCC AGATGGCAAAAGAGTTTCAGGAAGCGATGGCGCGTGATGAAGCGCTGGGGCTAAACCCGGACGAAATCGCGTTCTACGAT GCGCTGGCAGAAAACGAAAGTGCGGTACGGGAGCTGGGTGATGACGTCCTTAAGAAACTGGCTATCGAAGTCACGTTAAA ATTGCGCCAGTCCACAACCGTAGACTGGCAGGTGCGAGAAAGCGTGCGTGCGCGGTTACGTATTCTGGTGCGTCAGACGC TGCGTAAGTACAAGTATCCGCCAGATAAAACACCTTATGCAGTTGAACTGATACTGAAGCAGGCTGAAGTGGTGTCGAAC AGCTGGACGGTATAG Protein sequence : MLSEDDLEQQSLQWFAELGWEVLHGPDIAPDGNNPLRASFHDVFLRPVLLEQLQKINPHLPVAVLDEVILRIAHAQSPDL VVSNKAFHHLLLDGVPVQYKQDDKVIHDKALLMDFNHPNNNHFTVVNQVAIQGTKQVRRPDVICYINGLPVVVIELKSPI DANADIWAAFNQLQTYKNELSDLFICNEALVVSDGYNARIGSLTANEERFLPWKTLSNEDDKPLFEWQLETVVKGFFNRE LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVTATIVASTGKHLPLRSNITPGSKKAGVVWHTQGSGKSISMCCYA GKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQAQDLLKQEPLQANDRDQLREMLNVRESGGIIFTTVQKFAPLDGEQTH PALNLRSNIVVISDEAHRSQYGLSATLNRETGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ DAVEDGATVPIYYESRLAKLDLNHEELETLSNQVDELVEDEETDQKEKTKSDWSRLEKLVGSEPRINEVAADLVQHFEAR NATMNGKAMIVAMSREICVKLYDALVALRPEWHSDDVEKGEIKIIMTGSASDNKFLQPHIYNKQTKKRLEARFKDLNDPL KLVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTVD AHEAFSILLEKLDVIHGMFAKTPTAAGFDYTGFAEVPQRFLLKAADYVLGLDDGKKRFFDVVLAMNKAWSLCSTLDEAKP LQKEIAFLSAVKVAIIKLTTTDKKFSQSEKNTLLGKILDNAIIATGVDDVFALAGLDKPNIGLLSDEFLEEVRELPQRNL AVELLEKLLNDGIHARTKNNVVQEKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKEFQEAMARDEALGLNPDEIAFYD ALAENESAVRELGDDVLKKLAIEVTLKLRQSTTVDWQVRESVRARLRILVRQTLRKYKYPPDKTPYAVELILKQAEVVSN SWTV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 89 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
