Gene Information

Name : EcE24377A_2631 (EcE24377A_2631)
Accession : YP_001463681.1
Strain : Escherichia coli E24377A
Genome accession: NC_009801
Putative virulence/resistance : Virulence
Product : periplasmic pilus chaperone family protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 2622104 - 2622829 bp
Length : 726 bp
Strand : -
Note : identified by match to protein family HMM PF00345

DNA sequence : 
TTGGGTGCTACGACGCTAGCGTTACTGCTTAGCGCTGCCAGTTTATCTGCCCAGGCTTCTGTAACGCCAGATCGTACCCG
TTTGATATTTAATGAAAGCGACAAATCAATCAGCGTGACGTTGCGCAATAACGATCCGAAACTGCCTTATCTGGCCCAAA
GCTGGATCGAAGATGAAAAGGGTAACAAAATCAGTTCACCGTTAACTGTTCTGCCACCGGTGCAACGCATCGATTCAATG
ATGAACGGGCAGGTAAAAGTGCAGGGAATGCCGGATATCAACAAATTGCCTGCCGATCGTGAAAGCCTGTTCTACTTCAA
CGTGCGTGAGATCCCGCCAAAATCAAACAAAGCCAACACGCTGCAAATAGCACTACAAACGCGTATTAAGTTGTTCTGGC
GACCGAAGGCGCTGGAGAACGTCAGCATGAAAAACCCCTGGCAATATAAGGTTACTTTAACCCGCAACGGTCAGGAATTT
ACCGTCAATAACCCGACGCCGTATTACGTCATTTTCAGTAATGCCAGCGCGGAGAAAAACGGTAATCCGGCTGCGGGATT
TTCTCCGTTGGTTCTTTTGCCAAAAACTTCCGCGCCGCTGGGAGTGAAAATGGACAGCGTACCGGTACTGACTTACGTCA
ACGACTTTGACGCGCGGATGCCACTGTTTTTCAAATGCACAGGGAATACCTGTCAGGTGGATGAAGAGCATAGCCGTAAA
GGCTGA

Protein sequence : 
MGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVLPPVQRIDSM
MNGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKVTLTRNGQEF
TVNNPTPYYVIFSNASAEKNGNPAAGFSPLVLLPKTSAPLGVKMDSVPVLTYVNDFDARMPLFFKCTGNTCQVDEEHSRK
G

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 8e-46 43
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 2e-45 43
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 3e-45 43
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 3e-45 43
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 2e-45 43
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 2e-45 43
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 3e-46 43
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 7e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcE24377A_2631 YP_001463681.1 periplasmic pilus chaperone family protein VFG1547 Protein 5e-46 43
EcE24377A_2631 YP_001463681.1 periplasmic pilus chaperone family protein VFG0896 Protein 1e-45 43
EcE24377A_2631 YP_001463681.1 periplasmic pilus chaperone family protein VFG0885 Protein 3e-41 42