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Name : vipA (EcE24377A_2325) Accession : YP_001463385.1 Strain : Escherichia coli E24377A Genome accession: NC_009801 Putative virulence/resistance : Virulence Product : VI polysaccharide biosynthesis protein VipA/tviB Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 2288314 - 2289588 bp Length : 1275 bp Strand : - Note : identified by similarity to SP:Q04972; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 DNA sequence : ATGAATATTGATAATATAAAAATAGGCATCATTGGTCTTGGTTATGTTGGCCTGCCTTTGGCGGTGGAATTCGGGAAAAA ATATAATACTGTTGGTTTTGATATTAAACAAAACAGAATTGACGAATTAAAAAAACAAATGGATAGTACACTGGAGTGTA CTGCGGATGAGCTTGCTAGTGCGAAATTTCTTCACTATTCATGTGAAATCGAAGCACTCAAAGCGTGTAATATATTTATT GTTACTGTACCTACGCCAATTGATAAATATAAACGACCGGATTTAAGTCCCTTGGTTAGTGCTTCAAAAATGTTAAGCAA GGTTATTAAAAATGGCGATATCATTATATTTGAATCGACGGTCTACCCAGGCGCAACAGAAGAAATATGTGTTCCTCAGA TTGAAGCTGGTTCCGGATTAGTTTTCAACAAAGATTTTTTTATAGGCTATAGCCCAGAGAGAATCAATCCAGGAGATAAA AATCATAGAGTAACAAATATTATGAAAGTAACTTCTGGTTCAACACCAGAAGCAGCAACGTTTGTGGATAAAATTTACTC CTCAATTATAACAGCCGGGACATACAAGGCATCATCTATTAAGGTGGCTGAGGCCGCTAAGGTAATTGAAAATACGCAAC GAGATCTTAATATTGCACTAATAAACGAATTGGCTATCATCTTCAATAAATTAGGTATTGATACTGAGGATGTTTTAAAG GCAGCGGGTACTAAATGGAATTTTCTCCCTTTTCGTCCCGGCCTGGTTGGTGGTCATTGTATCGGGGTTGACCCATATTA TTTAACGCATAAAGCTCAAGAAATTGGTTATCATCCAGAGGTTATTTTGGCTGGTAGACGTATTAATGATGATATGGCAC GTTATGTTGCATCTCAACTTATAAAGGAAATGATTAAGGCAGGTATTCTAATAGATAATGCTAATATTTTAATTATGGGG TTATCTTTTAAAGAAAATTGCCCTGATATTCGCAATACGAAAATTATTGATATAATATCAGAATTAAAAGATTATAATTT GAATGTCGATGTTTATGACCCTTGGGTAAGTGAAGATGAGGCATTGCAGGAATATGGCATAGAAATTCATTCTACTAAAC CTTCTAAGAAATATGAAGGCATAATTTTTGCTGTAGCCCATGAGCAATTCAAAAATATGCAATCCATTGAAATCAAGGAG CTGCAGTCCACAAAATGTGTGACATATGATTTGAAATATATTCTTAATAAATCAGATGCAACAATTAGACTTTAA Protein sequence : MNIDNIKIGIIGLGYVGLPLAVEFGKKYNTVGFDIKQNRIDELKKQMDSTLECTADELASAKFLHYSCEIEALKACNIFI VTVPTPIDKYKRPDLSPLVSASKMLSKVIKNGDIIIFESTVYPGATEEICVPQIEAGSGLVFNKDFFIGYSPERINPGDK NHRVTNIMKVTSGSTPEAATFVDKIYSSIITAGTYKASSIKVAEAAKVIENTQRDLNIALINELAIIFNKLGIDTEDVLK AAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQEIGYHPEVILAGRRINDDMARYVASQLIKEMIKAGILIDNANILIMG LSFKENCPDIRNTKIIDIISELKDYNLNVDVYDPWVSEDEALQEYGIEIHSTKPSKKYEGIIFAVAHEQFKNMQSIEIKE LQSTKCVTYDLKYILNKSDATIRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-128 | 63 |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-128 | 63 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-107 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| vipA | YP_001463385.1 | VI polysaccharide biosynthesis protein VipA/tviB | VFG0431 | Protein | 5e-129 | 63 |
